Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2924 ATGAATCGATACTCCTCTTACCCCAATCCAGCTGGAGATAGACTAATTGAACCAGACATTTCTTTAGCATCCGCTGATTTTATAGGTGTTGCCTGGGCTGGCCTTTTAACCTTTTCCTGTAATTTTCACTACTCTATGACTTGGTTAACTCTTTGCATCAGATGGGCAGTCCTCCTTTTGTGCAATGTATTCGGTTTTCTCTTTAATCAGAGGAAGGAAGATTGCTTATTTGCGCCATTGATATTCAAATTTCAACAGACAATGGTTGGATTCCACAGTGACCATATACATGGGAACAAGTATAACGGTAATGATAACAAATTTTCGCCGGGTCGTGTTGAACGGCTTGTGAGAGGAAGAGAGCGAAGAAGAAGCACCAGGGAATCTAATTTGAATGATTCTCCTGATAGAATTAATAATAATCATGTGGCTACTGAATCTTTTGAGCATGAACCGCGCTTGAGAGAAGATACTAACGGCTCCTATGTTGAACGATTCCTGGAAGGGGCTGCAGCAGCAAGGGCACTTCCTCTTAGTAATGGATGCAAAACCGAGGATGGGAAGCCTTTCAAACAACGCCTGTTAGTGGTTGCCAATAGGTTGCCAGTCTCAGCAGTTAGGAAAGGTGAGGATTCATGGTCTTTGGAGATAAGTGCTGGTGGCCTCGTAAGCGCTCTTTTAGGTGTGAAGGAGTTTGAGGCGCGGTGGATAGGTTGGGCTGGTGTCAATGTGCCAGACGACATTGGACAGAAGGCTCTTACAAAGGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATCGTTCATCAATACTACAATGGCTATTGCAATAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGATCGCCTTGCTACAACACGTACTTTCCAGTCTCAGTTTGAAGCATACCAGAAAGCAAATCAAATGTTTGCTGATGTTGTGACTAAACACTACAAAGAGGGCGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACAGTAAAATGAAAGTTGGCTGGTTTCTCCATACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCCGAACTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTCCACACCTATGATTATGCACGACATTTTGTCAGTGCATGCACTCGCATTCTTGGACTTGAGGGCACACCTGAAGGGGTTGAGGATCAAGGGAAGCTCACTCGAGTTACTGCATTTCCAATTGGTATAGATTCGGAACGATTCAGAGGTGCACTTGACCTTCCTGAAGTTCAGGGTCACATCAAAGAATTTCAAGAAAGATTTAAAGGAAGAAAGATTATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAACTTCTTGCATTTGAAAAGTTTTTGGAAGAGAATGAATATTGGCGTGATAAAGTAGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAATATCAAAAACTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTGCTGTTCCAATACATCACCTGGACCGCTCTCTTGAATTTCATAAACTATGTGCTTTGTATGCTGTTACGGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGTTATGAATTTGTGGCTTGCCAAGAAAACAAGAAAGGAGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAGTCTCTTGGTGCTGGGGCAATTCTGGTTAACCCTTGGAACATCACACAAGTTGCTGCCAGTATTGCCAAGGCTCTGAATATGCCATCTGCTGAAAGAGAAAAGAGACATAGGCATAACTTTCATCATGTGAAAACCCACACCGCCCAGGAATGGGCAGAAACTTTTGTAAGCGAACTAAATGATACTGTTGTTGAGGCACAGCTAAGGACAAAGCAAGTCCCACCACGGCTCCCAACCAAGACTGCAATTGAACGTTATCGGCAGTCAACTAATCGATTGATTATTTTGGGATTCAATGGAACTTTAACTGAACCAGTTGAGAGAAAAGGTGATCAGTATAAAGAATTGGAGCCCACAGTGCACCCAGAACTGAAACAACCCTTGACAAAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGGAGTGGTAGAACCGTTCTAGATGAAAACTTTAAAGAATTTGACGTGTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTTGAAGGGAGAATGGATGACAACAATTCCAGAACTACTACAGAATATGGAATGGGTTGGCAGTGTGAAGCATGTTTTTGAGTACTTCACAGAACGAACACCTCGGTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAGACACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAAGGACATGCTGCAACATCTCTCGACAGGTTCAATATCTAATGCATCACTTGAAGTTTTTCAAGGGAGCCGATCTATTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCTATTGACCGTATCCTGGGGGAGATAGTCCACAGTAAATCCATGACAATACCAATTGATTGTGTTCTCTCTATAGGACATTTTCTGGCGAAGGATGAAGATATATATGCCTTTTTTGAGCCAGAGCTTCCTTGTGTTGGTGTGGGTCTCCCACGAGGAAAGGTAACTGATGCTGCAGGAGTTAAGTTTCCAGTTGAGAGGATATCGACTTTGAAGATCTCAGCTAGTAAAAATGGAGCAAAGTCATTTCAAAACAAGGGACAACGACCTCTCTCCAATTCTGAAAAGAAAGCAAGTAATCATCATATCTGCCCGCCGCAGCGGCCAGCTACTACTGAAAAGATCTCTTGGAATGTCCTTGACCTGAAGAAGGAAAATTACTTTTCTTGTGCTGTTGGACGAACTCAAACAAACGCTCGGTATACTCTTGGGTCATCCGATGACGTTATTGCCTTCTTTAAGGAACTAGCTGATGCCTCTTGA 3084 0.428 MNRYSSYPNPAGDRLIEPDISLASADFIGVAWAGLLTFSCNFHYSMTWLTLCIRWAVLLLCNVFGFLFNQRKEDCLFAPLIFKFQQTMVGFHSDHIHGNKYNGNDNKFSPGRVERLVRGRERRRSTRESNLNDSPDRINNNHVATESFEHEPRLREDTNGSYVERFLEGAAAARALPLSNGCKTEDGKPFKQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDDIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFEAYQKANQMFADVVTKHYKEGDVVWCHDYHLMFLPQCLKNYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVTAFPIGIDSERFRGALDLPEVQGHIKEFQERFKGRKIMLGVDRLDMIKGIPQKLLAFEKFLEENEYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLEFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQENKKGVLILSEFAGAAQSLGAGAILVNPWNITQVAASIAKALNMPSAEREKRHRHNFHHVKTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTKTAIERYRQSTNRLIILGFNGTLTEPVERKGDQYKELEPTVHPELKQPLTKLCSDPKTTVVVLSGSGRTVLDENFKEFDVWLAAENGMFLNPLKGEWMTTIPELLQNMEWVGSVKHVFEYFTERTPRSHFEEREASLVWNYRHADVEFGRLQAKDMLQHLSTGSISNASLEVFQGSRSIEVRAAGVTKGAAIDRILGEIVHSKSMTIPIDCVLSIGHFLAKDEDIYAFFEPELPCVGVGLPRGKVTDAAGVKFPVERISTLKISASKNGAKSFQNKGQRPLSNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVIAFFKELADAS* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2924 1027 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 120 1024 IPR001830 GO:0003824|GO:0005992
Lja3g2924 1027 Pfam Glycosyltransferase family 20 193 658 IPR001830 GO:0003824|GO:0005992
Lja3g2924 1027 SUPERFAMILY HAD-like 690 877 IPR036412 -
Lja3g2924 1027 MobiDBLite consensus disorder prediction 946 967 - -
Lja3g2924 1027 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 193 658 IPR012766 GO:0003825|GO:0005992
Lja3g2924 1027 MobiDBLite consensus disorder prediction 118 151 - -
Lja3g2924 1027 MobiDBLite consensus disorder prediction 946 976 - -
Lja3g2924 1027 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 192 661 - -
Lja3g2924 1027 Pfam Trehalose-phosphatase 696 909 IPR003337 GO:0003824|GO:0005992
Lja3g2924 1027 Gene3D - 781 861 - -
Lja3g2924 1027 Gene3D Glycogen Phosphorylase B; 185 439 - -
Lja3g2924 1027 Gene3D Glycogen Phosphorylase B; 440 643 - -
Lja3g2924 1027 CDD HAD_TPP 691 909 - -
Lja3g2924 1027 CDD GT20_TPS 193 658 IPR001830 GO:0003824|GO:0005992
Lja3g2924 1027 TIGRFAM T6PP: trehalose-phosphatase 689 904 IPR003337 GO:0003824|GO:0005992
Lja3g2924 1027 Gene3D - 693 875 IPR023214 -
Lja3g2924 1027 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 120 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2924 Lja-Chr3 52172234 52190707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2924 98 1027 Trehalose Biosynthesis Gene Families AT1G78580 74.156 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2924 K16055 - gmx:100789554 1530.38