Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2921 ATGAAGATTCAGTGTAACGTGTGTGAAGGTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCAGCGCTGTGTTGGGATTGTGATGAGAAGGTTCATGCTGCTAATAAACTCGCTAGCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTTCCTCTCATATGCCTAAATGTGATATTTGCCAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGAGCTCTACTTTGCAGAAAATGTGATTTGTCGATACACACTGCAAATGCATATGTCTCTGGTCATCAAAGATTTCTACTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAACCTGGGGCTTCCTCAACTTCTTTGAAGTCAGATTCGGGAGAGAAAAATTCTGATACGAAGTCTTCTTCTGTCTCCAGAAAGGTTTCTGCAATGCTTCAGTCATCAGATTACAATGAAGTGTTACCCACTGAAGTTGGAGGATTTGGGGAGTTTCCACCAGCTAAGGCGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTGGTTAATTGATGATTTTTTTGGGATTAATGAATTTAGTCAGAACTATAATTACATGGATGGATCATCACGGGCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCTTTTTTAAGATCCGGTGAAGACGAAATGGAGGATGATGACTGCTTGGGACGTGTTCCAGATTCATCCTTGTCAGTTCCTCAGATTCCATCCCCACCTACAGCTTCTGGTTTACACTGGCCAAAAAACCCTCAATATTCATCTGATAGTGGCCTTTTTGTTCCTGACATATCTTTTTCTAGCATGCAACGGCCACAGAGTAGTAGTATTTTTTCAAGACCACGCAGGCATATTTAA 879 0.4323 MKIQCNVCEGAEAKVLCCADEAALCWDCDEKVHAANKLASKHQRVPLSLSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLSIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKNSDTKSSSVSRKVSAMLQSSDYNEVLPTEVGGFGEFPPAKASYGGGSTAGNISQWLIDDFFGINEFSQNYNYMDGSSRADSGKLGDSDSPFLRSGEDEMEDDDCLGRVPDSSLSVPQIPSPPTASGLHWPKNPQYSSDSGLFVPDISFSSMQRPQSSSIFSRPRRHI* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2921 292 MobiDBLite consensus disorder prediction 271 286 - -
Lja3g2921 292 MobiDBLite consensus disorder prediction 238 257 - -
Lja3g2921 292 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 280 - -
Lja3g2921 292 Gene3D Classic Zinc Finger 1 92 - -
Lja3g2921 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lja3g2921 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lja3g2921 292 CDD Bbox1_BBX-like 5 47 - -
Lja3g2921 292 MobiDBLite consensus disorder prediction 111 137 - -
Lja3g2921 292 MobiDBLite consensus disorder prediction 271 292 - -
Lja3g2921 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja3g2921 292 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lja3g2921 292 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lja3g2921 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 - -
Lja3g2921 292 MobiDBLite consensus disorder prediction 201 257 - -
Lja3g2921 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lja3g2921 292 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2921 Lja-Chr3 52047276 52051489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2921 1 275 C2C2-CO-like Transcription Factor Family AT1G78600 48.377 7.93e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lja3g2921 zf-B_box 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2921 - - gmx:100790959 483.796