Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2913 ATGGAAGGAACAACCATCTTTCGCGAGCACAAAGCCATTACCACTAAGCTTCTAAACTCTGCTAATTTCATCATGTCGCCTAAAGTCATTCGTATTTCAGTGATGGATCACTACGCCACAGACTCTTCTAGCGAGGAAGAAGAAGAAGATTGTTTACCAAGAGGAAAGAAAGTGGTTAATGAGATCAGATTCTGCAAAACTTCTTCATGTTCTTCGAAAAACAACAACAACAACAACAAGAGACAACAGGATCATAATAATGTCTCAAAGTATCGCGGGGTTCGCCAAAGACCTTGGGGAAGATGGGCTGCTGAGATCCGGGATTCTATTACGCGTAAGCGGGTGTGGCTCGGGACTTATGACACTGCAGAAGAAGCTGCTATGGTGTATGACAGAGCAGCAATTAATTATAGAGGTGCTGGTGCTGTTACCAATCTCATCAAACCACCACCATCTCATCAGAAAGAAAAAAATGATGAAGTTGAATCTCTTATTTATAATAATAGTAAGGATCATGATTTGTGTTATTTATCTTCACCTACTTCTGTTATTGTAGTTATGCCTGCGGAAGAGATGGGTGTGGAAACTTTGGATAAACCTCTTCTTCCTATTGTTACTAATGACAACAATTGCATTGATTTTGATGTTCCTTTTCATCTAGAGGAGGATTTTGAATCATGTAAATGGGATTTAGATGATTACTTCAATGAACCTTGGGCTCTGTAA 726 0.3953 MEGTTIFREHKAITTKLLNSANFIMSPKVIRISVMDHYATDSSSEEEEEDCLPRGKKVVNEIRFCKTSSCSSKNNNNNNKRQQDHNNVSKYRGVRQRPWGRWAAEIRDSITRKRVWLGTYDTAEEAAMVYDRAAINYRGAGAVTNLIKPPPSHQKEKNDEVESLIYNNSKDHDLCYLSSPTSVIVVMPAEEMGVETLDKPLLPIVTNDNNCIDFDVPFHLEEDFESCKWDLDDYFNEPWAL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2913 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 196 - -
Lja3g2913 241 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Lja3g2913 241 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 MobiDBLite consensus disorder prediction 69 92 - -
Lja3g2913 241 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 SUPERFAMILY DNA-binding domain 89 146 IPR016177 GO:0003677
Lja3g2913 241 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 Pfam AP2 domain 89 139 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 MobiDBLite consensus disorder prediction 69 84 - -
Lja3g2913 241 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Lja3g2913 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 7 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2913 Lja-Chr3 50494855 50495580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2913 7 237 AP2-EREBP Transcription Factor Family AT4G27950 38.433 9.26e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g2913 AP2 1.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2913 - - lja:Lj0g3v0150929.1 467.618