Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2890 ATGGCTTCCGATTCTCCTTCTCCGAGTTTCAACAACGGTCCTTCATCCCCCGACGATTCCAATTCCAGCCCAATCGGCAACACCTTTTCCTCTCCCGGCCAGAGACGCCGCCGCCGCTCCACCACTCCATCAGCGTCCGGTACCCCGCCGCACCACCGCTCCCGATTCGCCTCCGATGCCACCCCAACTCCCTCGCGCCTCCGGCAAAGAGGCGGCGGCGGTGGTGGCGGTGTGCCCTTCACGCCCACCTCCACCTCCGACGACGTGCCTGTCTTCTCCGACGGCGGCGATGACTTCGACATGGACGATGCCAGGCCTACTTATGTCTGGGGCACCAACATAAGCGTGGAGGACGTGAACAACGCGATTCATAGGTTTCTGAGGGATTTCAGGGAAGCAACTACAACTACTGGTGATGATGATGATGACGGGTTGTTGTTGCACACTGAAGGGAAGTATGAGAAGTTGATCAGGCAGGTTATTGAAATCCAAGAGGATTCTTTGGATGTTAATGCGCGTGATGTGTTTGATCATGACCCAGATTTGTACACCAAGATGGTTAGGTACCCTCTTGAAGTGCTTGCGATTTTCGACTTGGTTTTGATGAACATGGTTAGCCGAATGAATCCCAGTTTCGAGAAGCACATTCAAACTCGGATTTTCAATCTTAAAACCTCCACATCAATGAGAAATTTGAACCCCTCTGATATTGAGAGGATGGTGTCACTCAAGGGAATGATTATAAGATGTAGCTCAATCATACCTGAAATAAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGGTTTTGCACTGAACCAGTTGCTGTAGAAAGAGGGCGGATTACTGAACCTACTTTATGCTTGAGGGAAGAGTGTCAGTCCAGGAACTCAATGACACTGGTTCACAACCGATGCAGGTTTTCAGATAAGCAAATTGTGAGGCTCCAGGAGACTCCTGATGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTAGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGGCCAACTCAGAGAACTGTCAAGTCATTATTCAAGACGTATATTGATTGTCTTCACATAAAGAAATCCGATAAGTCCAGGATGCTGATAGAGGACACTATGGAGGTTGAATATACCCAGGGAACAAAATCAGAAGTTACCTTTGATGACGTAAAGGTGGCTAAACTGAGGGAGCTGTCACAAGACCCGGATATATATGAAAGACTGACAAAGTCATTAGCGCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGACACTGGCATCCGGCGCTAGCTTCCGTGGTGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAACTACTTCAGTACATACACAAATTATCTCCACGTGGCATTTACACAAGTGGCAGGGGGAGTTCTGCTGTTGGATTGACTGCTTATGTGACCAAAGATCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCTCTAGTTTTGAGTGATCGTGGTATCTGCTGTATAGATGAATTTGATAAAATGTCTGACAATGCCAGGAGCATGTTACACGAGGTTATGGAACAACAAACTGTTTCAATAGCGAAGGCAGGCATTATTGCTTCCCTTAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCTGTCCAGGTTCGATTTGATCTACTTAATCCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACACATTGTTTCCCTCCACTTTGAGAATCCTGATAACATGGAGCATGACGTGTTGGACCTCTCTACACTAACTGATTATGTTACCTATGCCCGAAAGTACATACACCCACAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGGTATGTGGAAATAAGAAGAAGAGGAAATTTTCCGGGGAGTAGTAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTTTGATACGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATTGGTTGAAAAACGTGACGTGATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAACAGTCTGCAACGGATCACTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGGGAAAGTCTGCTACAAGCAACGCGGAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCCAAGCGGTTATTGGAGTTATTGGAGGAGTTGAAGCAGCAGAACACTGGAAGTGAAATTCATCTTGCTGATGTAAGGACTGCAATAGCTACTCTTGCCAGCGAAGGATTTATTACCATGCATGGTGACAGTGTAAAAAGATCATGA 2514 0.4662 MASDSPSPSFNNGPSSPDDSNSSPIGNTFSSPGQRRRRRSTTPSASGTPPHHRSRFASDATPTPSRLRQRGGGGGGGVPFTPTSTSDDVPVFSDGGDDFDMDDARPTYVWGTNISVEDVNNAIHRFLRDFREATTTTGDDDDDGLLLHTEGKYEKLIRQVIEIQEDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRMNPSFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCTEPVAVERGRITEPTLCLREECQSRNSMTLVHNRCRFSDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKSDKSRMLIEDTMEVEYTQGTKSEVTFDDVKVAKLRELSQDPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALTLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPDNMEHDVLDLSTLTDYVTYARKYIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSELVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKMQIGGPSKRLLELLEELKQQNTGSEIHLADVRTAIATLASEGFITMHGDSVKRS* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2890 837 ProSitePatterns MCM family signature. 536 544 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja3g2890 837 MobiDBLite consensus disorder prediction 1 89 - -
Lja3g2890 837 Gene3D - 113 223 - -
Lja3g2890 837 ProSiteProfiles MCM family domain profile. 427 633 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 94 836 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 Gene3D - 229 368 IPR012340 -
Lja3g2890 837 SMART mcm 225 741 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 483 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 556 569 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 580 592 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 607 615 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 528 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g2890 837 SUPERFAMILY Nucleic acid-binding proteins 148 379 IPR012340 -
Lja3g2890 837 Gene3D - 746 835 IPR036388 -
Lja3g2890 837 SMART AAA_5 469 619 IPR003593 -
Lja3g2890 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 94 836 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 Pfam MCM P-loop domain 415 637 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 302 314 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 589 606 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 741 750 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 443 454 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 251 264 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja3g2890 837 Gene3D - 256 308 - -
Lja3g2890 837 Gene3D - 412 745 IPR027417 -
Lja3g2890 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 753 IPR027417 -
Lja3g2890 837 Pfam MCM OB domain 229 358 IPR033762 -
Lja3g2890 837 Pfam MCM AAA-lid domain 653 739 IPR041562 -
Lja3g2890 837 Pfam MCM N-terminal domain 121 222 IPR027925 -
Lja3g2890 837 CDD MCM4 430 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2890 Lja-Chr3 48735664 48741288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2890 1 836 Core DNA Replication Machinery Family AT2G16440 72.600 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2890 K02212 - gmx:100782586 1389.02