Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2886 ATGATTTTCCTTCGACTTTTCCACCTCTGGCTTCTTGCCTTTTGCTTCTTATCTTCATTTGCTCGTGGAGCTACTCTATTAAAAGAAGAAGTGCAAGTTATGAAAGAAATAGCCAAGAAACTTGGGAAGAATGATTGGAATTTCAGCGTAGATCCGTGCAGTGGAGAAAGTAACTGGACATCGTCTGTTCAAGTGAAAGGGGTTGAAAATGCTTTCAGCTGCAACTGCTCTTTCGCCAATTCAACTGTCTGCCATGTTGTTAGCATGTACGCTTCTGATCTCCTTATGTTGATGGATTTTATAAAGGGATCTTTTCCATTGCAAATTTCTGTTCTCAAGTCACAAAACCTTTCGGGCACACTTCCATGGGAACTAGTAAGTGACCTAACGCGCAACTACCTTAATGGTACAATTCCTTCACAATGGGGCTCCATGAATCTTGTAAACATTTCCTTTCTTGGAAACCGACTAACTGGTCCAATCCCAAAAGAAATTGGAAATATTACAACCCTAAAAAGTTTGGTTCTGGAGTTCAATCAGTTATCTGGAAAGCTTCCTTCAGAGCTTGGGAATCTTCACCGGCTTGAAAGACTTGAACACAGGATCTCTATCACTAACAATGTTGGCAGGAGCTCCATGCAACTTATAGATTTCCTTCAGAAAAATCTGTCTTCTCTACATCTTCAGGCTTCATCCTCAATTGTCAATCTCATCATAGGTTCATCAGAAGAATCCCCATTCCCATTCAAAGCATTGAGAGAGACTCTGGGAACACCAGAAGCTGTTAACTGCTTCTGTTATTCTAACTGCCAGCTAATCAACAACTACCCGCTACTAACCTCCAACTATTTTACTGGAAATTTACCAGCAACATTTGCTGGGCTAACTAAACTGAAGCATGTAGACCTCAGCTTTAACAAATTAAGTGGACAGATTCCAAACACCTTGGGTGATCTAGAGAACATGAATATACTATACTTAACTGGAAACCTTTTTACTGGAACACTTCCCAATTGGATAGCTAGACCTGACTACACGGGAAAGGTTTCATGTTTCGGAAATATTTACTGTCCTAAAAGTTTGTACTCTCTCCATATAAATTGTGGTGGCAAGATGATAACTTCTAATGGAAGCGTGACGTTTGATGATGATTCACATGAAGCCGGACCTGCAACATTTTACCAGACTAAATCAAATTGGGCAGTTAGCACCACTGGTCACTTCTTTGATAGCGGCCTCATGGATTACTATACCTGGTCTAATTCAACTAAGCTTGCTATGGATGATGGTGAACTGTATATGGATGCTCGTGTCTCTCCTCTTTCCCTCATGTATTATGGATTTTGCCTGGGAAATGGAAAGTACACAGTAAATCTCCATTTTGCAGAGATAATGTTCACGGATGACCAAACATATTCCAGCCTTGGAAGGCGTAGAAACTTGGTGCTGAAGGATTTCGATATTGCAGAAGCAGCAGGAGGAGTTGGTAAGGCAGTCATTAAAAAGTTCACTGCCATCGTGACTAATAATACCTTGGAGATCCGCTTTCATTGGGCTGGGAAAGGGACAACTGCTATCCCATTTGGATCAGTCTATGGTCCTCTTGTATCAGCTATTTCTGTTGATTCTGAATTTACACCCCCAGTGGAAAGTGGAACTGGTATGCGGCGCATGCCAGTGCGGTCTATTGTTTTAGCTGTAGCTGCTGGAGCATTTGCTATCATCACGGTATTTGGTATAGCTTGGTGGAGAGGATGTCTAAGACAGAAAGATTCACAAGAAATAGAGCTAAGAGGTTTAGATCTTCAAACTGGCTTATTCACCTTACGGCAAATCAAAGCAGCAACTAACAACTTTGATATTTCTTTTAAGATTGGAGAGGGAGGGTTCGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGCACAGTAGTAGCAGTTAAGCAGCTTTCTTCTAAATCAAGGCAAGGAAATCGTGAGTTTGTAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCATGTCTAGTTAAGCTCTATGGATGTTGTATGGAGAGAGATCAGTTGATGTTGATATATGAATACATGGAAAACAATAGCCTAGCTCGTGCGTTGTTTGCCCAAGAAAAATGTCAATTGAAGTTGGACTGGTCGACAAGGAAGAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGGCTAAAGATAGTTCACAGAGACATCAAGGCCACTAATGTGTTATTGGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTAGCCAAGCTCAAAGATGACCGCTATACCCATATAACCACCAGAGTAGCTGGGACTTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGAGAAAGTAGATGTTTATAGTTTCGGAGTTGTTACCTTGGAAATTGTTAGTGGGAAGAGCAACACCATGAACCGGCCAAAGGAAGAATGTTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAAGAAGAAGGTAACATAATGGACCTAGTTGATGAGTGGTTGGGTGAAAACTTTAAAAAAGAAGAAGTAATGGTCATGATCAATGTGGCCCTTATATGCACACAAGTTTCTCCGACGCAGAGGCCCACCATGGTTTCAGTCGTGAGCATGCTTGAAGGCAAAACTGTTGTACGAGAGGTGGTGTCTGACACAAACCAACAGTTTCACCAGCAGAGAGAACATAATAAGAACCATGAGACTCAAGAAGAGAGCATCTCAATTGATGAAATTGGAGCTTTTATGTCTGATACAGATCTAAATTCCCTCAACATGGACTATTCTGGCAGTGATCTATAG 2853 0.4111 MIFLRLFHLWLLAFCFLSSFARGATLLKEEVQVMKEIAKKLGKNDWNFSVDPCSGESNWTSSVQVKGVENAFSCNCSFANSTVCHVVSMYASDLLMLMDFIKGSFPLQISVLKSQNLSGTLPWELVSDLTRNYLNGTIPSQWGSMNLVNISFLGNRLTGPIPKEIGNITTLKSLVLEFNQLSGKLPSELGNLHRLERLEHRISITNNVGRSSMQLIDFLQKNLSSLHLQASSSIVNLIIGSSEESPFPFKALRETLGTPEAVNCFCYSNCQLINNYPLLTSNYFTGNLPATFAGLTKLKHVDLSFNKLSGQIPNTLGDLENMNILYLTGNLFTGTLPNWIARPDYTGKVSCFGNIYCPKSLYSLHINCGGKMITSNGSVTFDDDSHEAGPATFYQTKSNWAVSTTGHFFDSGLMDYYTWSNSTKLAMDDGELYMDARVSPLSLMYYGFCLGNGKYTVNLHFAEIMFTDDQTYSSLGRRRNLVLKDFDIAEAAGGVGKAVIKKFTAIVTNNTLEIRFHWAGKGTTAIPFGSVYGPLVSAISVDSEFTPPVESGTGMRRMPVRSIVLAVAAGAFAIITVFGIAWWRGCLRQKDSQEIELRGLDLQTGLFTLRQIKAATNNFDISFKIGEGGFGPVYKGVLSDGTVVAVKQLSSKSRQGNREFVNEIGMISALQHPCLVKLYGCCMERDQLMLIYEYMENNSLARALFAQEKCQLKLDWSTRKRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDRYTHITTRVAGTYGYMAPEYAMHGYLTEKVDVYSFGVVTLEIVSGKSNTMNRPKEECFSLVDWVHLLKEEGNIMDLVDEWLGENFKKEEVMVMINVALICTQVSPTQRPTMVSVVSMLEGKTVVREVVSDTNQQFHQQREHNKNHETQEESISIDEIGAFMSDTDLNSLNMDYSGSDL* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2886 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Lja3g2886 950 Pfam Protein kinase domain 623 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2886 950 Pfam Leucine rich repeat 279 331 IPR001611 GO:0005515
Lja3g2886 950 Pfam Malectin domain 363 539 IPR021720 -
Lja3g2886 950 ProSiteProfiles Protein kinase domain profile. 619 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2886 950 SUPERFAMILY L domain-like 128 341 - -
Lja3g2886 950 SMART serkin_6 619 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2886 950 SUPERFAMILY Protein kinase-like (PK-like) 603 900 IPR011009 -
Lja3g2886 950 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 94 198 - -
Lja3g2886 950 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 278 340 - -
Lja3g2886 950 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 354 926 - -
Lja3g2886 950 CDD STKc_IRAK 625 892 - -
Lja3g2886 950 Gene3D - 364 544 - -
Lja3g2886 950 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 354 926 - -
Lja3g2886 950 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 94 198 - -
Lja3g2886 950 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 278 340 - -
Lja3g2886 950 Gene3D Transferase(Phosphotransferase) domain 1 695 909 - -
Lja3g2886 950 Gene3D Ribonuclease Inhibitor 29 245 IPR032675 -
Lja3g2886 950 Gene3D Ribonuclease Inhibitor 249 363 IPR032675 -
Lja3g2886 950 Gene3D Phosphorylase Kinase; domain 1 584 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2886 Lja-Chr3 48651020 48679693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2886 20 934 Receptor kinase-like Gene Family AT1G53420 45.040 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g2886 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2886 - - gmx:100786496 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2886 3 48651020 48679693 Lja3g2886 3 48651020 48679693 ECH