Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2870 ATGCAAGAAAAATCGGAATCGCGAAATTTTCATTTTTCCAAATTTCCAAAACCTATAAATAACGAGAAAATGAAATTTTTTTCAAAACTTCCCCATTTTCTTTCCCAAACCCGCGAGCAACCCCAAGGAGAGGAGGAGGATTTGATTTTCTCCCTCCTCATCAAGGGGGGGGGATTTCGTTTTTCGAAAACTTGTCTTAACGCGTTAGATTGTCGTACTTCGGAGTTTATAATGTTTCGTGAAACCCTAGTACTTATTTATCAGTTCAAATATCAATTAGGTAGCTTCAAATCATTCACTGAAATCTTCTATGTGGGGGGCATGGGGGAAATGGCTTTTGATAAAACGGGCACAATAACAAGAGGAGAGTTCTCAGTGACAGATTTTTGTGCTGTGTTAAATCAAGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAATCAAATTAATTCTTCAATTGCTTTGCACTTTTTGGGCAACTTCTTGTATCTGTTTATCGCAAGCACATTGCTTGGGGTTTTGACAAGTCTTCTCAGTGCTTACTTCATTAAAAAGCTATACATTGGCAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATGCTGGCCGAATTAGCTTATTTGAGTGGAATTCTCACCGTATTCTTTTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGAACGCCTTTGCTACCTTGTCGTTTGTTGCTGAGACCTTCATCTTCCTTTATGTTGGGATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGCCCTGGAACATCTGTAGCAGTGAGTTCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCTTTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGGCTAAGAAATCGCAGAATGACAAAATCAGCTTAGACAACAAGTATGGCTTATTTCTTTCAACGAGGCTGACTCGTTGGTGCCAATCCCTCCGGAATGCATCTTGTTCCTTTGCATTTGCACTTCATGCACCATTCATGTTTGAGTTGTTAGACACGGACACCCCGGTGTCTTGGGTGGTCGACCCCGTCGGTCACCGAGCCATTTACATGGGGCGAATAATGGAGGACCACGTCGACCGAATGGGAAACCTGACGCAAGGAGTCTTGAGAAGCCACACGCTTTTTGTGTGGTTCTCTTTACGGGAGTCACAGGGAGTTGGTCGGATTAGGAGGTCTTCGGGCTGTTTTGAGCTGACCTACTTTCTTTTTGGAGGACTGTATATCAGAATACTGACCTTATATTTTGTGTTGTACATATTTGCCGGTAGGCACTACTTTCCCGTCACTGGAGGTTACTCGTGA 1464 0.4242 MQEKSESRNFHFSKFPKPINNEKMKFFSKLPHFLSQTREQPQGEEEDLIFSLLIKGGGFRFSKTCLNALDCRTSEFIMFRETLVLIYQFKYQLGSFKSFTEIFYVGGMGEMAFDKTGTITRGEFSVTDFCAVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQINSSIALHFLGNFLYLFIASTLLGVLTSLLSAYFIKKLYIGRHSTDREVALMMLMAYLSYMLAELAYLSGILTVFFCGIVMSHYTWHNVTESSRITTKNAFATLSFVAETFIFLYVGMDALDIEKWKFVSDSPGTSVAVSSVLLGLILLGRAAFVFPLSFLSNLAKKSQNDKISLDNKYGLFLSTRLTRWCQSLRNASCSFAFALHAPFMFELLDTDTPVSWVVDPVGHRAIYMGRIMEDHVDRMGNLTQGVLRSHTLFVWFSLRESQGVGRIRRSSGCFELTYFLFGGLYIRILTLYFVLYIFAGRHYFPVTGGYS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2870 487 Gene3D - 124 162 - -
Lja3g2870 487 PANTHER SODIUM/HYDROGEN EXCHANGER 2 130 349 - -
Lja3g2870 487 Pfam Sodium/hydrogen exchanger family 139 342 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja3g2870 487 ProSitePatterns E1-E2 ATPases phosphorylation site. 114 120 IPR018303 -
Lja3g2870 487 PANTHER SODIUM/HYDROGEN EXCHANGER 130 349 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2870 Lja-Chr3 46531034 46539620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2870 72 374 Antiporters AT3G05030 61.424 1.26e-124 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2870 - - gmx:100816746 362.459