Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2864 ATGTTAGATCTTAATCTGAATGCTGAGTCGACTCACAACGATGACTCGTTTCTCGAAGAAGCTGTTTCTTCCGGAACCTCGAATTCCTCCATCGTGAATGCGGAGGGGTCGAGTAACGGGGTAGGCGATGAGGACTCGTGCTCCACACGCGCCGCCGGACACGTCATCACCTTCGATTTCGGCATCCTTAAGGTGGAAGGAGTGGGGAGCGACGTCGCGGCGGCGACCAGGGAGCTGTTTCCGGTGATTGCTGGGAGTTGGCCGGTGCCGACGTTTGTGGCGAAGAAGAGCGTCGTGGATCTCTCGCTGGATCATCACAGGAGCGAGAACGGTGAGGTGAAGGTGGTTCAGGTACCGCAACCGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGATACCGCTCATGCAGCTGCTAGAGCTTATGATCGAGCTGCAATCAAGTTCAGGGGTCTTGATGCTGACATTAATTTCAACCTTGTTGATTATGAGGACGATCTGAAACAGATGAAGAATCTCTCCAAGGAGGAATTCGTGCACATACTGCGTCGCCACAGCACCGGTTTCTCAAGGGGGAGCTCAAAATACCGTGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGGCCTATGACAAGGCAGCTCTCAAGTGCAATGGAAGAGAGGCAGTGACCAACTTTGAGCCATGTACATATGAAAGCGAGATGAAACCCGAAGCTATTAATGAAGGTGGCAATCACAATCTTGACCTCAATTTGGGTATGGCAACCCCAGGACATGGTCCCAAAGATAACAGGGGTCATCTTCAGTCCCAGCCTGTCCCTTACAACATGCATCCTGGAAGAAGTTCAAAGATGGAGACAAATGCTAATTCAGTCATTGGTGATCCGTCTTTGAAAAGGCTGGTAGTTACTCAAGACCGTCCTTCTGTATGGAATTCCACGTACTCCCGTTTCTTTCCCACTGAGGAAAGAGCAGAGAGAATAGGCTTAGATCCTTCAAAAGGACATAGCAACTGGGCGTGGCAAACGCATGGGCAAGTGAGCGGTGCTACCCCAGTACCACCGTTCTCTTCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCACCCACTCCCATCTTTCCAACAAAATCTATGAACTCAATTCCACAGAGCCTCTGTTTCACTTCACCCAGTGCACCTGGTAGCAATGCATCTCAATACTACTATCAGGTGAACTCCCAGAAGGCACCATCATAG 1386 0.5051 MLDLNLNAESTHNDDSFLEEAVSSGTSNSSIVNAEGSSNGVGDEDSCSTRAAGHVITFDFGILKVEGVGSDVAAATRELFPVIAGSWPVPTFVAKKSVVDLSLDHHRSENGEVKVVQVPQPQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAALKCNGREAVTNFEPCTYESEMKPEAINEGGNHNLDLNLGMATPGHGPKDNRGHLQSQPVPYNMHPGRSSKMETNANSVIGDPSLKRLVVTQDRPSVWNSTYSRFFPTEERAERIGLDPSKGHSNWAWQTHGQVSGATPVPPFSSAASSGFSISATFPPPTPIFPTKSMNSIPQSLCFTSPSAPGSNASQYYYQVNSQKAPS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2864 461 ProSiteProfiles AP2/ERF domain profile. 139 195 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 447 - -
Lja3g2864 461 Pfam AP2 domain 139 187 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 SMART rav1_2 139 201 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 SMART rav1_2 231 279 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 Gene3D AP2/ERF domain 230 274 IPR036955 GO:0003700|GO:0006355
Lja3g2864 461 Gene3D AP2/ERF domain 138 197 IPR036955 GO:0003700|GO:0006355
Lja3g2864 461 CDD AP2 139 194 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 447 - -
Lja3g2864 461 SUPERFAMILY DNA-binding domain 138 195 IPR016177 GO:0003677
Lja3g2864 461 CDD AP2 230 273 IPR001471 GO:0003700|GO:0006355
Lja3g2864 461 MobiDBLite consensus disorder prediction 20 45 - -
Lja3g2864 461 MobiDBLite consensus disorder prediction 119 140 - -
Lja3g2864 461 SUPERFAMILY DNA-binding domain 230 273 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2864 Lja-Chr3 46193107 46197390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2864 1 418 AP2-EREBP Transcription Factor Family AT5G60120 48.009 8.87e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g2864 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2864 K09284 - gmx:100777102 653.284