Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2861 ATGACCGAGTTTACAGAATTGTTCCCTGTAGGCAAGCAAATAGATGGTTTGATGTATATGTACGTGTACATCATCACCTTCGATTTCCAAACATTCATTATCATTTGCATCATAGTCACACTGTTCTTCTTCATCTTCTATCAAATTCTCCACGGTTTGTTCTACTGGCTCATGGAAATGCGGTCAAACGAATTGTATGACCTTGAAGGAGGAACACAGCTAGCTTACCACGGTGACTCAGGGCGGGTCACCGTCTTTCATGCTCTTGTCCTAAACAATTTGCAGGCATGGACAATGGCCTCCCAATTTCTAATAGATTTTGATGAGAAACGAGGGCAAAAGCTTAGAGCATTGAAGAAATTGCCTCCATTAGTGAATTTTGGAAGACATGATGTAGTGCGAAGTTGTAATGAATGTGCAATTTGCCTTGAAGATTTCCAACACATTTTTCATTCAGATTGCATAGACCGATGGTTGCAGAAGAAATCAACGTGTCCAATATGTCGTAAATGTATATTAGATTAA 525 0.3962 MTEFTELFPVGKQIDGLMYMYVYIITFDFQTFIIICIIVTLFFFIFYQILHGLFYWLMEMRSNELYDLEGGTQLAYHGDSGRVTVFHALVLNNLQAWTMASQFLIDFDEKRGQKLRALKKLPPLVNFGRHDVVRSCNECAICLEDFQHIFHSDCIDRWLQKKSTCPICRKCILD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2861 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 173 IPR013083 -
Lja3g2861 174 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 174 - -
Lja3g2861 174 Pfam RING-H2 zinc finger domain 138 169 IPR024766 GO:0008270
Lja3g2861 174 PANTHER - 15 174 - -
Lja3g2861 174 SUPERFAMILY RING/U-box 138 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2861 Lja-Chr3 46059028 46065647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2861 67 170 C3H Transcription Factor Family AT1G53010 34.400 1.25e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2861 - - gmx:102660073 207.994