Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2848 ATGGTTTTCTCCGAGAAAATGGACCAGTTCATCGACAACTTGCCGCCGATGGATCTGATGCGATCGGAGAAGATGACCTTCGTTCAACTCATCATCCCCGCCGAGTCCGCTCACCGAGCCATCTCCTATTTGGGCGAACTCGGCCTCCTCCAATTCCGAGATTTAAATGCTGAAAAAAGCCCTTTCCAGAGAACGTTTGTTAATCAGGTCAAGAGGTGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATCTCTTCTACTCGTATTGTATTGCAACGGGACATTGACTTAGAGGATTTGGAGGTACAACTTGCTGAGCATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTTCGACAATCATATAATGAACTTCTGGAATTCAAGATTGTATTGCAGAAGGCATGCGGTTTTCTTGTTTCAAGTAATGGCCATGCTGTCTCGGACGAGAGAGAATTACAGGAGAATATATACTCAAATGATGACTATGTTGAGACAGCATCTTTGCTTGAACAGGATATGGTGCCTCAACCATCAAATCCATCTGGTTTAAGATTTATCTGCGGGATAATCTGTAAATCCAAGGTTCTTAGGTTTGAGAGAATGTTGTTTCGAGCTACAAGGGGAAATATGCTTTTTAATCAAGCACCAGCTGGTGAACAAATCATGGATCCTGTTTCAACTGAGATGATTGAGAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGATCAGGCAAGAACAAAGATTCTGAAGATTTGTGAGGCATTTGGTGCCAATTGTTATCCTGTTCCAGAAGATATAAGTAAGCAGAGGCAAATAACTAGGGAGGTTTCTTCACGTCTTACTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCACCGGAACAAAGCTCTAGCTTCTATCACCGACCATCTAGCAAACTGGATGAACATGGTAAGAAGAGAGAAGGCCGTGTATGATACACTGAACATGTTAAATTTTGATGTCACAAAAAAATGCCTTGTTGGAGAGGGCTGGTGCCCTATGTTTGCTAAAACACAGATGCAGGAGGCGCTGCAACGTGCAACTTTTGATAGTAATTCTCAAGTTGGCATAATCTTCCATCCGATGGATGCAGTGGAATCACCTCCTACATACTTTAGGACCAACACTTTCACAAGCCCATATCAGGAAATTGTTGATGCATATGGTGTTGCTAGATACCAAGAAGCAAATCCTGCAGTTTACACGACTGTTATATTCCCCTTCCTATTTGCTTTGATGTTTGGGGACTGGGGACATGGAATTTGCCTGTTACTGGGAGCGTTAGTTCTTATAGTACGTGAAAACAAGCTCAGCACGCAGAAACTTGGAAGTTTTATGGAGATGCTATTTGGTGGGCGCTATATTCTTCTTATGATGGCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTTTCTGTTCCTTTTCACATATTTGGTGCATCAGCCTATCAATGCCGTGATAGTTCATGCAGGGATGCACATACTGTTGGCTTAATCAAATACCGAGATCCATACCCGTTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCGGAATTGTCTTTTCTTAACTCTCTGAAGATGAAGATGTCCATTCTGTTTGGTGTGACCCATATGAACTTAGGAATTTTATTAAGTTATTTCAATGCTCGTTTCTTTGGATGCTCACTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTATTGTTAAGTGGTGTACTGGCTCTCAAGCGGACCTTTATCATGTAATGATATATATGTTTTTAAGCCCCACAGACGATCTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTATTATTGCTTTTGGCCATAGTTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCGGCACACTGAGAGATTTCAAGGTCGTAGTTATGGTCTTTTGAATACTTCTGAGATGGATCTTGAGGTAGAACCAGATTCTGCCAGGCAACATCATGAAGAATTCAATTTTAGTGAAGTTTTTGTTCACCAAATGATCCACTCCATTGAGTTTATTCTAGGTTCAGTTTCGAATACAGCATCATATCTTCGACTTTGGGCATTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAACCTTGTCATTCGGTTGGTGGGGCTAGCTGTTTTTACCTTCGCAACTGCCTTTATACTACTTATGATGGAGAGTCTTAGTGCTTTTCTTCATGCTCTGCGGCTTCACTGGGTTGAATTTCAAAATAAATTCTACCATGGTGATGGCTTCAAGTTCAAGCCCTTTTCATTTGCCGCCTTAACAGAGGAAGACGATTGA 2478 0.4144 MVFSEKMDQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLISSTRIVLQRDIDLEDLEVQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSNGHAVSDERELQENIYSNDDYVETASLLEQDMVPQPSNPSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPAGEQIMDPVSTEMIEKTVFVVFFSGDQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLDAGIRHRNKALASITDHLANWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPMFAKTQMQEALQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTSPYQEIVDAYGVARYQEANPAVYTTVIFPFLFALMFGDWGHGICLLLGALVLIVRENKLSTQKLGSFMEMLFGGRYILLMMALFSIYCGLIYNEFFSVPFHIFGASAYQCRDSSCRDAHTVGLIKYRDPYPFGVDPSWRGSRSELSFLNSLKMKMSILFGVTHMNLGILLSYFNARFFGCSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFWGQRPLQIVLLLLAIVAVPWMLFPKPFILKKRHTERFQGRSYGLLNTSEMDLEVEPDSARQHHEEFNFSEVFVHQMIHSIEFILGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFTFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGFKFKPFSFAALTEEDD* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2848 825 Pfam V-type ATPase 116kDa subunit family 43 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lja3g2848 825 Coils Coil 106 133 - -
Lja3g2848 825 PANTHER VACUOLAR PROTON ATPASES 11 825 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lja3g2848 825 PANTHER VACUOLAR PROTON ATPASE A1 11 825 - -
Lja3g2848 825 PIRSF ATP6V0A1 15 825 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2848 Lja-Chr3 44951217 44977424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2848 7 818 Primary Pumps ATPases(2) AT2G28520 80.245 0.0 1362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2848 K02154 - gmx:100793301 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2848 3 44951217 44977424 Lja3g2848 3 44951217 44977424 ECH