Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2845 ATGGCCAAGGCACTTGGCACACTCTATTTGGTGTTACTTCACCTTTACCTGTGCTTTGTCCTGACCCAATCAGCACCAGAGACTGCGCTTGTAACAGAGATTCCAGGTTTCAATGGCACATTACCTTCCAAGCACTATGCTGGGTATGTAACAGTGGATGCAAAGCACGGAAGGAACTTATATTACTATTTCGTTGTGTCAGAAGGTAAACCTTCTGAGGATCCAGTGGTTCTGTGGCTTAATGGTGGACCTGGTTGCTCTAGCTTCGATGGCTTCGTATACGAACATGGCCCTTTTAATTTTGAAGCTGCAAAGAATAAGGGAAGCCTGCCAACGCTGCATCTGAATCCATACAGCTGGTCAAAGGTATCCAATATTATATATCTGGATTCTCCTTCTGGTGTGGGGTTTTCATACTCTGAGAATGAAACTGATTATGAAACAGGAGACATTAAAACTGCCTCTGATTCGCATGCCTTTCTCCTTAAGTGGTTTGAACTCTATCCTGAGTTCCTTTCCAACCCATTCTTCATTGCTGGAGAGTCATATGCTGGAATTTATGTGCCTACTCTTGCTTCTGAAGTAGCAAAAGGAATTGACGCTGGTGTAACGCCCAATCTGAATTTCAAGGGTTACATGATTGGAAATGGTGTTACAGATGACAAATTTGATGGAAATGCACTTGTTCCATTTGTACACGGGATGGGTATAATTTCAGATGAACTGTTTGAGGAGGCTAATGGTGAATGCAAAGGGAATTTCTACAATCCACTCAGTGAAAATTGTACAAGCAAGCTTAACAAAATTGAGCAGGATGTTGATGGGTTGAACATATATGACATTCTAGAACCATGCTATCATGGCACAGAGGCCGAGAAGATTAAAGCTTCCTATATTAGATTGCCACCTAGCTTCCGGAAGTTGGGTGAGACTGAGAAACCTCTTCCTGTGAGGAAAAGGATGTTTGGACGCGCTTGGCCCCTAAGAGCACCTGTGAGAGAAGGAATTGTACCAACTTGGCCTCAACTGATGGATAGCAATGATGTTCCGTGCACTGATGATGTAGTCGCAAAATTATGGTTGAACAATGAAGCAGTCAGGAAAGCAATTCACACTGCAAAGACAAGTTTGGTCAGTCAATGGGATTTATGCACGGGCAGGATTAGATACAATCATGATGCTGGGAGCATGATCAAATACCACAAGAACCTAACTTCCAAAGGATATCGAGCCCTTATATACAGTGGTGATCATGACATGTGTGTTCCTTTTACGGGGAGTGAAGCATGGACGAGATCAATGGGATACAAGATTGTTGATGAATGGAGGCCTTGGTTCTCCAATGATCAAGTTGCTGGGTTTACTCAAGGATATGACAAAAATCTTACTTTTATGACTATAAAGGGAGCTGGACATACTGTTCCGGAATATAAACCGCGAGAGGCATTGGAATTTTATACACACTTTCTCACTGGATTGCCATTATGA 1488 0.4267 MAKALGTLYLVLLHLYLCFVLTQSAPETALVTEIPGFNGTLPSKHYAGYVTVDAKHGRNLYYYFVVSEGKPSEDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKNKGSLPTLHLNPYSWSKVSNIIYLDSPSGVGFSYSENETDYETGDIKTASDSHAFLLKWFELYPEFLSNPFFIAGESYAGIYVPTLASEVAKGIDAGVTPNLNFKGYMIGNGVTDDKFDGNALVPFVHGMGIISDELFEEANGECKGNFYNPLSENCTSKLNKIEQDVDGLNIYDILEPCYHGTEAEKIKASYIRLPPSFRKLGETEKPLPVRKRMFGRAWPLRAPVREGIVPTWPQLMDSNDVPCTDDVVAKLWLNNEAVRKAIHTAKTSLVSQWDLCTGRIRYNHDAGSMIKYHKNLTSKGYRALIYSGDHDMCVPFTGSEAWTRSMGYKIVDEWRPWFSNDQVAGFTQGYDKNLTFMTIKGAGHTVPEYKPREALEFYTHFLTGLPL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2845 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 492 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 Gene3D alpha/beta hydrolase 23 313 IPR029058 -
Lja3g2845 495 Gene3D - 347 494 - -
Lja3g2845 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 Pfam Serine carboxypeptidase 35 491 IPR001563 GO:0004185|GO:0006508
Lja3g2845 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 20 17 492 - -
Lja3g2845 495 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Lja3g2845 495 SUPERFAMILY alpha/beta-Hydrolases 31 494 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2845 Lja-Chr3 44435499 44440691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2845 356 495 Calmodulin-binding Proteins AT2G22960 49.286 9.89e-43 148