Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2839 ATGAGTTGTTTTGGTTGCATAAAGTCACCACGCGAAAAAACCATTACCAATCACTCTAGGCGCAACGATAAGCCCACCAATCTCATTTCCCTTGATAAGGTTAAAGTTGATTTAAATGTGAATGGTATAAGAGAAGATAACTCTAAGCCTGATCAGCTTTCTCAGGACGTGAAGAGGTTGAATTTGAAAGATGAGGTTTCCAAGGATGGGAAACCCAACGGTTATCGAGCACAAACATTTACTTTTGATGAGCTTGCAACTGCAACAGGGAATTTTAGGTCAGATTGCTTCTTGGGTGAAGGGGGATTTGGCAAGGTTTATAGAGGTTTCATTGAGAGAATAAATCAGGTTGTAGCAATAAAGCAACTCAACCCTCATGGGCTTCAAGGAATTAGGGAATTTGTTGTTGAAGTGTTGACACTTAGTTTGGCAGACCACCCAAATCTTGTGAAGTTAATTGGGTTTTGTGCAGAGGGAGAGCAAAGGCTATTGGTTTATGAGTACATGCCATTAGGATCCTTGGAGAGCCATTTGCATGATATTTTGCCCGGGAAAAAACCACTTGATTGGAATACAAGAATGAAAATAGCTGCTGGTGCAGCTAGAGGTTTGGAGTACTTACATAATAAAATGAAGCCTCCGGTCATATATCGTGACATCAAATGCTCCAACCTTTTGATAGGTGATGGGTACCATCCCAAGTTATCTGATTTTGGCCTGGCAAAAGTTGGTCCAATTGGTGATAAGACTCATGTTTCCACTAGAGTAATGGGTACTTATGGGTACTGTGCCCCGGATTATGCAATGACGGGTCAATTGACATTCAAGTCTGATGTATATAGCTTCGGGGTTGTTCTTTTGGAGATCATCACAGGCAGGAAGGCCATAGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTATTCCGAGACCGGAAAAAATTCTCCCTGATGGTAGATCCATTGCTTGAAGGTCAATATCCAGTGAGAGGTTTGTACCAAGCTCTTGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAACATGCGTCCTGTTATAGTTGATGTGGTTACCGCTCTGAACTACCTTGCTACCAACAAATATGACCCTCAAAATCAGACAGTAGAAAGCTCTAATAGAAGAAACACATCTTCTCCAATGGGTAAAGGTGATGATCATAGACGTAATGATAGTAATGATTCTGGAACAGACATATCCGGAGATTAG 1245 0.4161 MSCFGCIKSPREKTITNHSRRNDKPTNLISLDKVKVDLNVNGIREDNSKPDQLSQDVKRLNLKDEVSKDGKPNGYRAQTFTFDELATATGNFRSDCFLGEGGFGKVYRGFIERINQVVAIKQLNPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLESHLHDILPGKKPLDWNTRMKIAAGAARGLEYLHNKMKPPVIYRDIKCSNLLIGDGYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDVYSFGVVLLEIITGRKAIDHTKPAKEQNLVAWARPLFRDRKKFSLMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLATNKYDPQNQTVESSNRRNTSSPMGKGDDHRRNDSNDSGTDISGD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2839 414 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2839 414 MobiDBLite consensus disorder prediction 376 414 - -
Lja3g2839 414 SUPERFAMILY Protein kinase-like (PK-like) 78 386 IPR011009 -
Lja3g2839 414 Pfam Protein kinase domain 97 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2839 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lja3g2839 414 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Lja3g2839 414 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2839 414 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 398 - -
Lja3g2839 414 MobiDBLite consensus disorder prediction 376 391 - -
Lja3g2839 414 MobiDBLite consensus disorder prediction 392 407 - -
Lja3g2839 414 CDD STKc_IRAK 98 367 - -
Lja3g2839 414 Gene3D Phosphorylase Kinase; domain 1 77 168 - -
Lja3g2839 414 PANTHER OS07G0668900 PROTEIN 1 398 - -
Lja3g2839 414 Gene3D Transferase(Phosphotransferase) domain 1 169 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2839 Lja-Chr3 43899949 43903635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2839 1 371 Glycoside Hydrolase AT3G07070 54.642 5.27e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja3g2839 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2839 - - gmx:100794680 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2839 3 43899949 43903635 Lja3g2839 3 43899949 43903635 ECH
Lja3g0780 3 7902909 7907297 Lja3g2839 3 43899949 43903635 ECH
Lja1g2114 1 24558386 24561403 Lja3g2839 3 43899949 43903635 ECH
Lja3g2839 3 43899949 43903635 Lja3g0780 3 7902909 7907297 PCT