Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2836 ATGGAGCAGCAGTTGAAGAAATCATCACTGAGAACATCATTCCCTCGTGACCCTCGTGGGTCCCTCGAAGTGTTCAACCCAACCGCAAGCAACTCCGCCTCACCGGCGCGCGCTCAGCCGCTCTGGAAAACGTGGAGCGGCGCGGAGGAGGAGGAGCCGCGTGAAATTTCCTCCGATGAGGTATCGTGGATGGCGCTAGAGGGCGAGGAGCGCGGCGTGGCGGCGGAGAGAGCCGCCGAGTGGGGGTTGGTGCTGAGGACGGATACCGAGACCGGGAAGGCGCACGGGGTGGCTGTGAGGAATTCCGGCGGGGATGAGCCTGGTGCGGGCGCCAAAGTTGCGGCGGTTTCTTGTTCTTCTAATAGGAGGAGCTCTAACAACTCCGGTAGAGACTCCGGCGAATCCTCCGACGGCGGCGGGGGGATTCCGAGGATTTCGAAGGATTTGAAGGACGCTTTGTCGACGTTTCAACAGACGTTTGTGGTTTCGGATGCTACGAAACCCGATTACCCGATCATGTATGCGAGTGTCGGGTTCTTCAAGATGACGGGTTATACGTCCAAGGAAGTCATAGGCCGGAACTGTCGGTTTTTGCAGGGTGCAGATACGGATCCGGAGGAAGTTTCAAAGATAAGGGAAGCGTTAGAAGCGGGGAAAAGTTACTGCGGAAGGTTACTGAATTACAAAAAGGACGGCTCACCTTTCTGGAACCTTCTCACCGTTTCACCCATCAAAGACGACGATGGCAAAGTGCTCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAAGGATCCAAGGAGAAGATGCTGCGGCCCAATGGATTGCCCGAATCATTAATCCGATATGACGCTCGTCAGAAAGAGAAGGCTGAAACTTCAGCATCTGAGTTGGTACAAGCTGTGAAGCGCCCCCGAGCACTCAGTGAATCAGAAAACCGTCCCTCCATCAGAAAATCAGAGAGTGCTGAAGATGAAGAAGAAGAGGAAGAAAAACCAGAAAAAACTTCAAGGAGAAAATCTGAGAGTGTGGCTTCATTTAGACAGAAACCACAAGTAAGAAATAGAAATTCAATGCAGCGAATCAGTGAGGTGCCTGAAAACAAACAGAAAAACAACCATCGCCATTCTTTCATGGGGTTCATTAAGAAAAGTCCTCCCAAAGATGAAAGCATAGCTAATGAAGTTATTGAGGTTGTCATCTCTGACAGTGAGGATGATGAGAGGCCTGATAGCTTCGAATTCGATGAAAAAGAAAAGCTCAGGGAAAAGAGGAAAGGTCTTGATCTTGCTACCACACTTGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATACAGTCGTGAAGAAATATTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGAAACTGTGAGAAAAATTAGAAAGGCCATTGACAACCAAACAGAAGTCACCGTGCAACTCATTAATTATACTAAGAGTGGCAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACACATAGAACCTCTTCACAACTGCATCGCAGTAGATAATGCAAAGGAGGGAGAACAATTGGTTAAACAAACCGCAGAATATGTTGATGAGGCAGCGAGAGAACTTCCGGATGCTAATCTGAAACCAGACGAGTTATGGATGAATCATTCAAAAGTGGTTCGCCCCAAACCGCATAGGAAGGAAGATGCAACTTGGAAAGCTATTCAAAAGATCCTAGAAAGTGGGGAACAGATAGGCCTAAAGCACTTCAGGCCAATCAAACCCCTGGGGTCGGGGGATACTGGCAGTGTGCATCTGGTGGAGCTAAGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGAGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCGTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTACTGTCCTGGTGGAGAGTTATTCCTGCTTCTTGACCGGCAGCCAACAAAGGTTCTCAAGGAAGACGCTGTGAGATTTTATGCTGCTGAGGTACTGATTGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGGCATTTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTGTAATTCCAGCTTCAAATGAAAAGAGGAAGAAGAAGAAGAAACAACAGAAAAGTCAGCAGGTTCCAATGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATTCTAGTGCTGTAGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGGTATACACCATTCAGGGGAAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCTCCATGCAAAGCAGCTAATTTACCGGTTGTTGCATAGAGATCCCAAAAACAGATTGGGTTCACAAGAGGGAGCAAATGAAATTAAGCGGCATCCATTCTTCCGGGGTGTCGATTGGGCACTAATTCGTTGCATGAAACCTCCAGAGCTTGATGCTCCTCTCTTACAAGAAACTGAAGAAGACAAAGAAGCCAAAGATGTAGACCCCAGGCTAGAAGATTTACAGGAAAACTTTTTCTGA 2898 0.4579 MEQQLKKSSLRTSFPRDPRGSLEVFNPTASNSASPARAQPLWKTWSGAEEEEPREISSDEVSWMALEGEERGVAAERAAEWGLVLRTDTETGKAHGVAVRNSGGDEPGAGAKVAAVSCSSNRRSSNNSGRDSGESSDGGGGIPRISKDLKDALSTFQQTFVVSDATKPDYPIMYASVGFFKMTGYTSKEVIGRNCRFLQGADTDPEEVSKIREALEAGKSYCGRLLNYKKDGSPFWNLLTVSPIKDDDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKAETSASELVQAVKRPRALSESENRPSIRKSESAEDEEEEEEKPEKTSRRKSESVASFRQKPQVRNRNSMQRISEVPENKQKNNHRHSFMGFIKKSPPKDESIANEVIEVVISDSEDDERPDSFEFDEKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVRKIRKAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLHNCIAVDNAKEGEQLVKQTAEYVDEAARELPDANLKPDELWMNHSKVVRPKPHRKEDATWKAIQKILESGEQIGLKHFRPIKPLGSGDTGSVHLVELSGTGQYFAMKAMDKSVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHLSLTDFDLSCLTSCKPQLVIPASNEKRKKKKKQQKSQQVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHSSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLHAKQLIYRLLHRDPKNRLGSQEGANEIKRHPFFRGVDWALIRCMKPPELDAPLLQETEEDKEAKDVDPRLEDLQENFF* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2836 965 MobiDBLite consensus disorder prediction 348 368 - -
Lja3g2836 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 166 258 IPR035965 -
Lja3g2836 965 ProSiteProfiles PAS repeat profile. 145 216 IPR000014 -
Lja3g2836 965 ProSiteProfiles Protein kinase domain profile. 629 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2836 965 MobiDBLite consensus disorder prediction 309 324 - -
Lja3g2836 965 TIGRFAM sensory_box: PAS domain S-box protein 453 543 IPR000014 -
Lja3g2836 965 TIGRFAM sensory_box: PAS domain S-box protein 172 265 IPR000014 -
Lja3g2836 965 Gene3D Phosphorylase Kinase; domain 1 628 946 - -
Lja3g2836 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Lja3g2836 965 MobiDBLite consensus disorder prediction 287 378 - -
Lja3g2836 965 Gene3D Transferase(Phosphotransferase) domain 1 713 943 - -
Lja3g2836 965 SUPERFAMILY Protein kinase-like (PK-like) 611 941 IPR011009 -
Lja3g2836 965 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g2836 965 ProSiteProfiles PAC domain profile. 219 273 IPR000700 -
Lja3g2836 965 SMART pas_2 147 216 IPR000014 -
Lja3g2836 965 SMART pas_2 430 499 IPR000014 -
Lja3g2836 965 Gene3D PAS domain 417 581 - -
Lja3g2836 965 MobiDBLite consensus disorder prediction 942 965 - -
Lja3g2836 965 SMART pac_2 222 264 IPR001610 -
Lja3g2836 965 SMART pac_2 505 547 IPR001610 -
Lja3g2836 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 444 543 IPR035965 -
Lja3g2836 965 CDD PAS 443 543 IPR000014 -
Lja3g2836 965 Pfam Protein kinase domain 631 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2836 965 Pfam PAS domain 451 543 IPR000014 -
Lja3g2836 965 Pfam PAS domain 166 262 IPR000014 -
Lja3g2836 965 ProSiteProfiles PAC domain profile. 502 556 IPR000700 -
Lja3g2836 965 CDD STKc_phototropin_like 627 939 - -
Lja3g2836 965 ProSiteProfiles PAS repeat profile. 428 501 IPR000014 -
Lja3g2836 965 MobiDBLite consensus disorder prediction 118 144 - -
Lja3g2836 965 CDD PAS 172 261 IPR000014 -
Lja3g2836 965 MobiDBLite consensus disorder prediction 118 134 - -
Lja3g2836 965 Gene3D PAS domain 159 317 - -
Lja3g2836 965 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Lja3g2836 965 MobiDBLite consensus disorder prediction 24 39 - -
Lja3g2836 965 SMART serkin_6 629 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2836 965 PANTHER PHOTOTROPIN-1 99 965 - -
Lja3g2836 965 MobiDBLite consensus disorder prediction 1 59 - -
Lja3g2836 965 PANTHER FLIPPASE KINASE 1-RELATED 99 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2836 Lja-Chr3 43606889 43630423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2836 2 965 AGC Kinase Gene Family AT3G45780 69.139 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g2836 Pkinase 4.1e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2836 3 43606889 43630423 Lja3g2836 3 43606889 43630423 ECH
Lja3g2836 3 43606889 43630423 Lja3g0777 3 7882222 7895401 PCT