Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2830 ATGTATAATGCACACTACTCTAACATTCCATTATCATCACCCTTCCATGAACTCACCGAGTTCGACACTCTCTCCCAACTCAACAACAACTACAACAATAACTGTTGCAGCAGTGGTTACAGCAGCAGCTACGGTGGTTCTCCCACCTCTGAGGCTCAGGCAAGCCCCACCTTGATGCAGAGGAGCGTTAGCAGTCACTCCCTCCACACCAACACCAAAAGTAACAATAATGGGACCTGCCACCACCCTTTTTCTGCTTTCTTTGCTGAGTTGCTAGACTCCGATCAGGACACTCCGGCGGTCAGGAGAGTTTACAGTGCCGGTGATCTGCAGAGAATTAATGGAATGCAACACGGTCAAAGTCATCATCATCACTCGGACAGTCCATTATCAAGTGAAAGCAGCATGATCATAGAAGGGATGAACAGAGTTTGTCGATACAGCCCAGAGGAGAAGAAAATGAGAATTGAGAGATACAGAAACAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGTAGGCCACGTGTCAGAGGACGGTTTGCGAGGAATGATGAAACTGACCAGAAACCTACAGTTCAGTGGAGCCACATTGGTGCTGCAGAGGAAGAGGATGAGGAAGATGAGAGTTGGGTCAGCATCTTTGATTCCATAGTTGCTGCAGCAAATCTAACTCAGGAATCTCAAGCCAGTTCCTCCTTTGGTCTATTGTATTAG 747 0.4672 MYNAHYSNIPLSSPFHELTEFDTLSQLNNNYNNNCCSSGYSSSYGGSPTSEAQASPTLMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDLQRINGMQHGQSHHHHSDSPLSSESSMIIEGMNRVCRYSPEEKKMRIERYRNKRNQRNFNKKIKYACRKTLADSRPRVRGRFARNDETDQKPTVQWSHIGAAEEEDEEDESWVSIFDSIVAAANLTQESQASSSFGLLY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2830 248 Pfam CCT motif 154 194 IPR010402 GO:0005515
Lja3g2830 248 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 248 IPR045281 GO:0009909
Lja3g2830 248 PANTHER CCT MOTIF PROTEIN 23 248 - -
Lja3g2830 248 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2830 Lja-Chr3 43444327 43447234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2830 148 200 C2C2-CO-like Transcription Factor Family AT5G15850 45.283 1.29e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g2830 CCT 6.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2830 - - gmx:102661609 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2830 3 43444327 43447234 Lja3g2830 3 43444327 43447234 ECH
Lja3g2830 3 43444327 43447234 Lja3g0774 3 7835970 7840273 PCT