Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2825 ATGGTTGGGCGTTTGAATCAACTAAGTAGCTTACGTTCGGGTAAAAGTAATGGAAGTATTAGGGTTAGGATCATTCGTATGTGGGAAAGTTGCCCAGTGAATCTACCAATGAAGCCATATTCACTTCACATTGTGCTAATTGATTATGAGGGGGTTAAAATTGAGGCCATTGCTAGAAACAATCTAATCACTAAATTTAAGAATGATCTACTTGAAGGGAAGGTTTACCGGATTTCGACTTTTATGGTTTCAACCAACAGTGGCTTTTTCATGGCTGTCAACAACGAGTTCAAGATCAATTTGGTTGACAAAACTAAGGCTGTTCTTGAAGAGGATCCCTTGATTCCATTGAACATGTTTACCTTCAAGAATTCAGAAGAAATCATAGCTACTGGGGGTGATTATAACTACTTGATTGACATCATTGGCTTGGTTACTAACGTTTCCAAGGAAAAACAATACAGTAAGGGTTGTGGTGTTACTAGGATGATTGAGATGGAGTTGACTGATGATAAGGGGAAGATTCAGTGTGCTTTATTTGGCAACTATGTTGATGTTGTCAAGGAATTAGTTGCTTCTAATGGTTATCGTATGGCTGTTGTGATTCTGCAATTTGTCAAGGTCAAGACATTCAAGGGTGATGTTGTACTTCAAAATGTTATGAATGCTACAAATGTTATTTGGAACCCGACCACACAAGAGGCTGCTACTTTTCGTGATGGGTTGGCTATCCATGGAATTGAATTTGATAAGCTTATAGCTGATATAGCTGATTTTGCTGAGGACGATGATATCCGAGTCATTCCATTAGGTGAGGAGTTCCTTACTTTATATCCCAGGAAAACGATACAACAACTCAACACCACTGCTGAGGATGGAGTTTTTGTAGTTAGAGCTACAATAGCTGGTATAACTCAGGGAGAGAAATGGTGGTACTCATCTTGTCGCTGCCACAAAGCTGTAAGCACCAGGGATGGGATGTACTATTGTCGCAGCTGCTCTAATTATGTTCTTTCAGTTATTCCATGTTTCCGGATCAAGTTAGAGGTGAATGATGGAGATGCAGATGCTGTTTTTGTGCTATTTGACACTGATAGTCAGCAACTGTTGTCTAGGAGCTGCCAACAGTTGGTCAACTCATCTAAGGGAAAAGATTCTGATGAATGTCCTACTGAAATAATGAACATTATTGGGAGTGAAATGCTTTTCAAAGTGGAGAAATCAGATGATCGCGCAGAAAAGTTTGATGAGTCATTCAAGGTGAAGAAGATATGCACTGATCTTGCTGTGATTGAAGCATTCAATGACGAGTTGGTCCATAATGATGGTCATAGTATATCATCACATATCATCACATTGCACTATATAACTCAGCACATTCTGTCAATGTATTTGCAAGATCTTCTATCTCTTTGTTTCATTTCATTTCATTCATTTCACTTCATCTCAACAATAGGAGTGCTATGCACACTCTGTGGTAAAGTCGTTAGCAGCATATATCAGAACAATATTGATCACTTGATTGAAATCGTTGGAGTTGTGACTGCTGCTTCAGATGTCAAGATGTTTATCATTGAAGGAAGAATGCGCAAGATGTTAGTTATGCAGCTTCAGGATTCATGGGGTCAGATTGCTTGTCTCTTAGAGGCCTTTCATTGTACTACAATTTTGAGAGTCAGCAGCTTCAGAGACAAGGTCCTTATCCAAAGCATACCGATTGCGTCAAAGCTCCTAATCGACCCAGACATGCAGGAAATTGCTTCTTTAACAGAGAGAATGCGGAGGTTTGGAATCAACTTCCATGGCCCTGTAGGGTACATTCGAACCAGTGAACCATCTAATATCAGAGATGACATGCTTGTCAACCATCCCAAAAAGACTATCACAGAAATACTTGAAATAAATCAGGCAGGTGTATTTGTTGTTCACGCTTTGATCGTCGGAGTGATTCGTGATGAGTATTGGTATTACCCATCGTGCCGCTGTTACACTGAACTCAGGTTCAATGGTCACAGATATGATTGCCTCAAGTGCGGACGATCAATTGACCAGATGGTTAATAGGTTCAGGCTTAGGCTCGAGCGTGAGAGGAAAGTAATCCCTCCTGGTGACATCCCAGCTGAAATTGAAGAACAACTTGCTGGAAAAGAGTTATTGTTTAAAGTTCGCAACAAGGTCGATATCATGATGGGAAGAGATGATTGTTTTGAGGTCATTAACATATGCTCTGATGCAGAAATTATTGAAATGTTTCATGGAGATGAAGTTGTTGTCACACCAAACAAGTTTGAAGATGCTGAAGAACATAAGAAGAATATCATAAACCAGAATGCTGAATCTTCTGGTTTAGGCAGAAGGGAATCACCTCTCAGAACAGGTCGCAACCCACGAAGGAAACTATTGATTGGTTTTTCATCAGATGAAGAAGAAGAAGACACTCATTCCCCTAAAGATAAGGCATGTGATGTTGAGATGGTTTCTGATGAAAATTCTGCTGGAATGGAAGTGGATCATGTCCCTCTTCGCCAGGATTCTGAAACTGACATCAGTCAGATGGCAGAGAAGATCACTGGCAATGTTCATGAAGGAAAGACTACAAATGTTTGCAATGTTAGTGTTGCTGTGGTTGGAGGATTGACTTCCAGTTCTCAATTGTTGGCTGCTGTAGAAGATAACAACAATATGGTTTGTGAAGCTGTTGTCAAGTCTGAGGACATCAACCAATGTGAAACTGTTCAGGAAACTACTTTTATGTTTGATGCGAACAAATCTTTGGAGACTAAAGATGAAGGTGCATATGCTAATGATCTTGATTTCCATGGTGATGAGGCTGAAGGCAGTCATGATTCTGAGATAATTATTATCTTGGATGATGATAGTGCAACATGA 2889 0.3991 MVGRLNQLSSLRSGKSNGSIRVRIIRMWESCPVNLPMKPYSLHIVLIDYEGVKIEAIARNNLITKFKNDLLEGKVYRISTFMVSTNSGFFMAVNNEFKINLVDKTKAVLEEDPLIPLNMFTFKNSEEIIATGGDYNYLIDIIGLVTNVSKEKQYSKGCGVTRMIEMELTDDKGKIQCALFGNYVDVVKELVASNGYRMAVVILQFVKVKTFKGDVVLQNVMNATNVIWNPTTQEAATFRDGLAIHGIEFDKLIADIADFAEDDDIRVIPLGEEFLTLYPRKTIQQLNTTAEDGVFVVRATIAGITQGEKWWYSSCRCHKAVSTRDGMYYCRSCSNYVLSVIPCFRIKLEVNDGDADAVFVLFDTDSQQLLSRSCQQLVNSSKGKDSDECPTEIMNIIGSEMLFKVEKSDDRAEKFDESFKVKKICTDLAVIEAFNDELVHNDGHSISSHIITLHYITQHILSMYLQDLLSLCFISFHSFHFISTIGVLCTLCGKVVSSIYQNNIDHLIEIVGVVTAASDVKMFIIEGRMRKMLVMQLQDSWGQIACLLEAFHCTTILRVSSFRDKVLIQSIPIASKLLIDPDMQEIASLTERMRRFGINFHGPVGYIRTSEPSNIRDDMLVNHPKKTITEILEINQAGVFVVHALIVGVIRDEYWYYPSCRCYTELRFNGHRYDCLKCGRSIDQMVNRFRLRLERERKVIPPGDIPAEIEEQLAGKELLFKVRNKVDIMMGRDDCFEVINICSDAEIIEMFHGDEVVVTPNKFEDAEEHKKNIINQNAESSGLGRRESPLRTGRNPRRKLLIGFSSDEEEEDTHSPKDKACDVEMVSDENSAGMEVDHVPLRQDSETDISQMAEKITGNVHEGKTTNVCNVSVAVVGGLTSSSQLLAAVEDNNNMVCEAVVKSEDINQCETVQETTFMFDANKSLETKDEGAYANDLDFHGDEAEGSHDSEIIIILDDDSAT* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2825 962 CDD RPA1_DBD_B_like 140 239 - -
Lja3g2825 962 PANTHER REPLICATION FACTOR A 1, RFA1 22 378 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja3g2825 962 Gene3D - 275 432 IPR012340 -
Lja3g2825 962 Gene3D - 619 698 IPR012340 -
Lja3g2825 962 SUPERFAMILY Nucleic acid-binding proteins 278 408 IPR012340 -
Lja3g2825 962 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 378 - -
Lja3g2825 962 Pfam Domain of unknown function DUF223 44 107 IPR003871 -
Lja3g2825 962 Gene3D - 115 246 IPR012340 -
Lja3g2825 962 CDD RPA1_DBD_C 281 405 IPR013955 -
Lja3g2825 962 Gene3D - 4 108 IPR012340 -
Lja3g2825 962 MobiDBLite consensus disorder prediction 772 819 - -
Lja3g2825 962 MobiDBLite consensus disorder prediction 801 819 - -
Lja3g2825 962 CDD RPA1_DBD_A_like 19 106 - -
Lja3g2825 962 Pfam Replication factor-A C terminal domain 295 429 IPR013955 -
Lja3g2825 962 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Lja3g2825 962 SUPERFAMILY Nucleic acid-binding proteins 126 246 IPR012340 -
Lja3g2825 962 SUPERFAMILY Nucleic acid-binding proteins 624 733 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2825 Lja-Chr3 43276870 43286362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2825 1 408 Core DNA Replication Machinery Family AT5G08020 22.326 2.01e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2825 - - lja:Lj6g3v0884310.1 429.483