Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2824 ATGATGGTGGATTTGAGAAAAGTTGGTTTCTTTTTTTGTGTTTTCTACATCTTGCCTTTGGCGTGTTTTTCTGCTACCTTTGTTCCTGTTGATAACTACCTTATAGATTGTGGAGCAACTTCAAGTACTCCAGTAGGTAACCTCAATTTCTCAGCTGATAGTTTCTCTAAGAAACTACTTTCCACACAAGAAGATATTCTTGCTAGTACCTCTTCAAAATCTGTTAATTCTTCATCTGATGAGTCCCCTTTGTACCAAACTGCAAGAATCTTCACTGGATCCTCAAAATACACTTTCCAAATTAACCAAAAGGGGAGACACTGGATCCGGCTTTACTTCTTTCCATTTACCTATGAGAAGTACAATTTGAATGCTGCAAGTTTCTCTGTTGCTACACAAAACCATGTTCTTCTTGGTGGCTTCACTGCTCAGAAAAATCCTGTGATGAAGGAATTTTCTGTAAATGTCACTACAGACACCCTTGTGCTCACATTCACGCCTTCGGAGAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGAGCTCATTGCTGATGATGCTTTTCAGTTAGAAACATTAGCAACCTACACTGGGCTGGTGACACAGGCTGTGGAGACAGTTTGGAGGGTTAACATGGGTGGTCCGGCTGTCTCCTCCGGCGATGACCCCCTTCGTCGAACCTGGATTCCGGATCAGAGTTTCCTTCGGATACCAAACCTTGTTTTGGATGTTTCGAATATTGATGCTGTTAAGTATGAGGATGGAGGGCCAACACAAAACATTGCTCCACCTACTGTTTATGGTACTGCCGCTCAGATGAACACGAGCAGTGATCCACGTAGTAATTTCAATATCACATGGCAGTTTGATGTGGTTCCTGGATTTCAGTACCTTGTTCGGCTTCACTTCTGTGATGTAGTCAGTAAAGGTCTCAACCAACTCTACTTCAATGCTTATGTTGACTCCTTGGCGGCTGCGAACCTTGATCTCAGTATTCTTAGTGATAATGTTTTGGGTGCTCCCTATTACAAGGATGTGGTAACAGCCTTGGCTGTCAGCAATACACTCCGTGTGAGCGTTGGTCCATCTGATGCAAATAATAACAACCATAATGCCATTTTGAATGGGCTGGAGATAATGAAAATGAACAATTCTGCCGGGAGCCTCAGCGCAGCGGCAGGGGCGGGGGTTATAACCTCTGGTTCGAGTTCTAGTAAAGTTGGTGTGATAGTCGGTGTGAGTCTCGGGCTACTTGGTGCAGTGGTATTGGCTGGTGTTTTCTTTGTACTATGCTGCAGAAGAAGAAAGTTGGCAAGACAAGCGCAGTCAAAGACATGGATTCCTTTGTCCATCAACGATGGAATTTCCCACACGATGGGAAGTAAATATTCCAATGGAACTACAATAAGCGCTGCTTCAAACTTCGAGTATCGTGTCCCTTTTGCTGCAGTTTGGGAGGCTACAAACAATTTTGATGAGAATTGGGTTATTGGGGTAGGTGGTTTTGGGAAAGTATACAAGGGAGAACTAAGCGATGGCACAAAAGTGGCTGTCAAGAGGGGCAATCCAAAGTCCCAGCAGGGGTTTGCAGAATTCCGAACTGAGATTGAAATGCTGTCTCAGTTCCGTCATCGCCATCTGGTATCTTTGATTGGTTATTGTGATGAAAAGAATGAAATGATCTTGATATATGAATATATGGAGCAGGGAACACTGAAGAGTCATCTATACGGTTCAGGTTTCCCGAGCTTAAGTTGGAAGGAGAGACTTGACATATGCATTGGATCTGCTAGAGGACTTCATTACCTACACACTGGCTATGCTAAAGCGGTTATTCACCGTGACGTGAAGTCTGCAAATATCCTACTTGATGATAACCTAATGGCCAAGGTTGCTGATTTTGGATTATCGAAGACCGGACCTGAACTCGATCAGACACATGTGAGCACAGCTGTGAAAGGGAGTTTCGGGTACCTTGATCCAGAGTATTTCAGGAGGCAACAACTAACAGAAAAGTCAGACGTGTATTCGTTCGGGGTCGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTCATAGATCCTTCCCTTCCTAGGGAAATGGTGAACCTTGCAGAATGGGCGATGAAATGGCAGAAAAAAGGGCAGTTGGAGCAAATCATAGATCCGACACTCGCCGGAAAAGTCCGACCGGATTCTCTTAGGAAGTTTGGAGAAACTGCGGAAAAATGCTTGGCCGACTATGGTGTTGACAGGCCTTCTATGGGGGATGTGTTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTGGTTCAAGGTGATCCTGAAGAGAACAGCACCAATATGATTGGTGAACTCTCACCACAGGTCAACAATTTCGACCACGATGCGAGTGCTTCTTCTGCTGTGCAATTTGAAGGTTCAACTGTGGATGATCTCTCTGGTGTTTCCATGAGCAGGGTATTCTCACAGTTGGTTAAGTCTGAGGGTAGATGA 2514 0.4443 MMVDLRKVGFFFCVFYILPLACFSATFVPVDNYLIDCGATSSTPVGNLNFSADSFSKKLLSTQEDILASTSSKSVNSSSDESPLYQTARIFTGSSKYTFQINQKGRHWIRLYFFPFTYEKYNLNAASFSVATQNHVLLGGFTAQKNPVMKEFSVNVTTDTLVLTFTPSENSTAFVNAIEVVSVPDELIADDAFQLETLATYTGLVTQAVETVWRVNMGGPAVSSGDDPLRRTWIPDQSFLRIPNLVLDVSNIDAVKYEDGGPTQNIAPPTVYGTAAQMNTSSDPRSNFNITWQFDVVPGFQYLVRLHFCDVVSKGLNQLYFNAYVDSLAAANLDLSILSDNVLGAPYYKDVVTALAVSNTLRVSVGPSDANNNNHNAILNGLEIMKMNNSAGSLSAAAGAGVITSGSSSSKVGVIVGVSLGLLGAVVLAGVFFVLCCRRRKLARQAQSKTWIPLSINDGISHTMGSKYSNGTTISAASNFEYRVPFAAVWEATNNFDENWVIGVGGFGKVYKGELSDGTKVAVKRGNPKSQQGFAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEQGTLKSHLYGSGFPSLSWKERLDICIGSARGLHYLHTGYAKAVIHRDVKSANILLDDNLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKWQKKGQLEQIIDPTLAGKVRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFDHDASASSAVQFEGSTVDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2824 837 SMART serkin_6 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2824 837 Gene3D Transferase(Phosphotransferase) domain 1 572 789 - -
Lja3g2824 837 Gene3D Phosphorylase Kinase; domain 1 458 571 - -
Lja3g2824 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Lja3g2824 837 PANTHER OS07G0166700 PROTEIN 20 829 IPR045272 GO:0004714|GO:0006468
Lja3g2824 837 Pfam Malectin-like domain 35 387 IPR024788 -
Lja3g2824 837 Gene3D - 207 389 - -
Lja3g2824 837 Gene3D - 32 183 - -
Lja3g2824 837 Pfam Protein tyrosine and serine/threonine kinase 501 695 IPR001245 GO:0004672|GO:0006468
Lja3g2824 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 20 829 - -
Lja3g2824 837 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2824 837 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Lja3g2824 837 SUPERFAMILY Protein kinase-like (PK-like) 472 767 IPR011009 -
Lja3g2824 837 CDD STKc_IRAK 502 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2824 Lja-Chr3 43263032 43266470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2824 5 837 Receptor kinase-like Gene Family AT3G46290 64.692 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja3g2824 Malectin_like 6.5e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2824 - - gmx:100305416 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2824 3 43263032 43266470 Lja3g2824 3 43263032 43266470 ECH
Lja3g0772 3 7823276 7826925 Lja3g2824 3 43263032 43266470 ECH
Lja3g2824 3 43263032 43266470 Lja3g0772 3 7823276 7826925 PCT