Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2809 ATGAGTGACTTGGAGTTGTCTATCATAGTCCCTTCCTCTCTTCCTGCGTCTCAGTTGAAGAAAAATGGGGGAGAAGTGCCAATAAACACAGACTGTGCAATTTGCTTGGGGGAATTTGAAGAAGGGGAATGGATAAAACTTCTTCCTAATTGTAGCCATGGCTTCCATGTTTCCTGCATTGACACTTGGTTTCAGTCTCATTCAAAGTGCCCCCTCTGTAGATCTCATGTGTCTACTCATAGTGTTCAGTTATCTTTTCACACATAG 267 0.427 MSDLELSIIVPSSLPASQLKKNGGEVPINTDCAICLGEFEEGEWIKLLPNCSHGFHVSCIDTWFQSHSKCPLCRSHVSTHSVQLSFHT* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2809 88 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 78 IPR044675 -
Lja3g2809 88 SUPERFAMILY RING/U-box 25 80 - -
Lja3g2809 88 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 80 IPR013083 -
Lja3g2809 88 Pfam Ring finger domain 31 74 IPR001841 -
Lja3g2809 88 ProSiteProfiles Zinc finger RING-type profile. 32 74 IPR001841 -
Lja3g2809 88 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 78 - -
Lja3g2809 88 SMART ring_2 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2809 Lja-Chr3 42532642 42532908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2809 6 88 C3H Transcription Factor Family AT4G33565 45.783 1.21e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2809 - - gmx:102660592 122.864