Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2807 ATGGTGCTGGAACTTCAGTCCAAATGGGGAAACAGATGGTCAAGAATTGCTAGCAAATTACCTGGGCGCACAGACAATGAGATTAAGAATTTCTGGAGAACCCACATGAGGAAGAAGGCTCAGGAGAAAAAGAAAGGATCATCAGCAGTTCCATCCCCAACACCTTCCTCAATATCCTCAAACAACAATCATGGGGAGGATTATTCACATGCTTCCAAAAAGGCTGGAGAAGAAAGTTTCTATGACACAGGGGGGTATGATCATCCTGCTATGGTAGGTTCAAGTTCAACCCAAGTTAAGGTAGGAGGGGGAAATCATCATGATGCTGAACAAGAAATCTCTATGGATGATATATGGAAAGATATTGATCTTTCAGAAGAGAACAGTGAAGAAGGCTGCAACTTTTCTTGTCCACCAATGCCTTCTCCATCATCATGGGAGTATTCTTCAGATCCTCTTTGGGTGATGAATGAAGAAAGCATGGTGTTCCCTGCAAGTGACACTTATTTTCTAACAGGCTAA 522 0.4253 MVLELQSKWGNRWSRIASKLPGRTDNEIKNFWRTHMRKKAQEKKKGSSAVPSPTPSSISSNNNHGEDYSHASKKAGEESFYDTGGYDHPAMVGSSSTQVKVGGGNHHDAEQEISMDDIWKDIDLSEENSEEGCNFSCPPMPSPSSWEYSSDPLWVMNEESMVFPASDTYFLTG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2807 173 Pfam Myb-like DNA-binding domain 3 35 IPR001005 -
Lja3g2807 173 ProSiteProfiles Myb-like domain profile. 1 36 IPR001005 -
Lja3g2807 173 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 164 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja3g2807 173 SUPERFAMILY Homeodomain-like 3 40 IPR009057 -
Lja3g2807 173 MobiDBLite consensus disorder prediction 67 81 - -
Lja3g2807 173 MobiDBLite consensus disorder prediction 47 66 - -
Lja3g2807 173 SMART sant 1 38 IPR001005 -
Lja3g2807 173 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 164 - -
Lja3g2807 173 CDD SANT 1 36 IPR001005 -
Lja3g2807 173 MobiDBLite consensus disorder prediction 18 107 - -
Lja3g2807 173 Gene3D - 1 74 - -
Lja3g2807 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2807 Lja-Chr3 42503979 42506546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2807 1 159 MYB Transcription Factor Family AT3G46130 45.349 1.05e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g2807 Myb_DNA-binding 2.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2807 K09422 - gmx:100775900 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0746 3 7587719 7589423 Lja3g2807 3 42503979 42506546 PCT