Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2805 ATGGCCTCTCTAGGTAATAATTCCATCCTTTGGCACTTCTTTTTGGCTATAGTGTTGGCTACTTTTTTCACTCCAAGCCTTAGTTCTGCCAAGAAATCTAAGATAATTGGCTTGAAAATGAATGTGATTGATCGATGCTGGAGACCAAATTCTGAGTGGAGGAGACATCGATCTCAACTAGCCACATGCTCTGTGGGTTATGCTGGAAAGATGACAAACAACATAGGTAACGATCTCATCCGTTATAAAGTTACTGACCCCAATGATGACCCAATAAACCCAAGACCTGGCACTTTAAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCAAGTTCCAAAGAGACATGCAGATTAGACTCGAGAGACCTCTTCTCATTAGTAGTTTCACCACCATTGATGCTCGAGGCGTCAACGTCAACATTGCTGATAATGCATGCTTGATGATCTATAAGGCTACCAACGTAATCATACATGGCATTAGGATTCATCATTGTAAAGCTCAAGCCCCTGGACTAGTGATGGGGCCTAATGGAAAACTTATTCCTTTGGGACAAGTAGATGGGGATGCAATCAGGCTAGTTACGGCTTCGAATATTTGGATTGATCATAACACACTTTATGATTGCGAAGATGGCCTTCTTGATGTCACACGGGGTTCTACTAATGTGACTGTGTCCAACAACTGGTTTAGAAATCAGGACAAGGTTATGCTTCTCGGGCATGATGATGGCTATGTAAGAGATCAGAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAATAATCTTTACCAGGGATGGTTGCAATATGCCATAGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACAACAGGGAGTAAGGAGGTAACATGGAGAAAAGGTAATAACACAAATGAGGATATGTGGGAATTTCATTCTGTGAGTGACGCTTTTGAAAATGGAGCTTCCTTCACGGAAACAAAAGGAGGGCGTGTGTGTAAGCCGAATTACAGCAAGGAACAAGATTTTGAAGTTTCTGATGTCAAATCTGTGAGATCTTTGACAATGTGGTCAGGGGCATTGCAGTGCAGCAAAACCTCTATATGTTAA 1176 0.4235 MASLGNNSILWHFFLAIVLATFFTPSLSSAKKSKIIGLKMNVIDRCWRPNSEWRRHRSQLATCSVGYAGKMTNNIGNDLIRYKVTDPNDDPINPRPGTLRYGASVIQGKVWIKFQRDMQIRLERPLLISSFTTIDARGVNVNIADNACLMIYKATNVIIHGIRIHHCKAQAPGLVMGPNGKLIPLGQVDGDAIRLVTASNIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMGPSLKSEANLFIAPTTGSKEVTWRKGNNTNEDMWEFHSVSDAFENGASFTETKGGRVCKPNYSKEQDFEVSDVKSVRSLTMWSGALQCSKTSIC* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2805 391 Gene3D - 40 384 IPR012334 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Lja3g2805 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lja3g2805 391 PANTHER PECTATE LYASE 18-RELATED 5 388 IPR045032 GO:0030570
Lja3g2805 391 Pfam Pectate lyase 133 308 IPR002022 -
Lja3g2805 391 PANTHER PECTATE LYASE 5 388 - -
Lja3g2805 391 SMART amb_all 117 314 IPR002022 -
Lja3g2805 391 SUPERFAMILY Pectin lyase-like 40 355 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2805 Lja-Chr3 42417938 42419440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2805 71 328 Polysaccharide Lyase AT5G09280 70.543 7.21e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2805 K01728 - gmx:100780437 669.077