Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2803 ATGAAGAGAGGCAGAGAAGAAGAGAGTGATCAACTAGACATGGCTAATTGCTTGATGCTTCTCAACAAAGTTGGTGAAAATGAAATCAAAACCAATCCATCAAGAGACTTGAACGACCACGGTGCGTATAAGTGCAAGACATGCAATAGGAGGTTTTCTTCTTTTCAAGCTCTCGGAGGCCATAGAGCGAGCCACAAGAAAACGAAGCTCATGGTTTCAGACCTTTCGTGCCATGCTCACAGCAGCAAGTTGCAGAGATCGACCACGAGGATGCACCCTTGCCCCATTTGTGGGCATGCGTTTGCGATTGGACAAGCACTCGGGGGTCACATGAGAAAACATAGAGTTGCTGCTATTAATAATCATGCCTTGCCTGTGTTGAAGAAATCAAGAGATGCTGATGATGAAACGTTGATGAATTTGTGTTTGGACTTGAACTTGGCACCCCCCGATCAGAATCATCTTAACCTTAATTATAAGCTGATCAACCTTCACACACCCGCTCTCAAACTCAATTGTTTCATTTAA 528 0.4413 MKRGREEESDQLDMANCLMLLNKVGENEIKTNPSRDLNDHGAYKCKTCNRRFSSFQALGGHRASHKKTKLMVSDLSCHAHSSKLQRSTTRMHPCPICGHAFAIGQALGGHMRKHRVAAINNHALPVLKKSRDADDETLMNLCLDLNLAPPDQNHLNLNYKLINLHTPALKLNCFI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2803 175 PANTHER ZINC FINGER PROTEIN ZAT5 7 174 - -
Lja3g2803 175 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
Lja3g2803 175 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Lja3g2803 175 Pfam C2H2-type zinc finger 92 115 - -
Lja3g2803 175 Pfam C2H2-type zinc finger 42 67 - -
Lja3g2803 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Lja3g2803 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Lja3g2803 175 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lja3g2803 175 SMART c2h2final6 43 65 IPR013087 -
Lja3g2803 175 SMART c2h2final6 92 114 IPR013087 -
Lja3g2803 175 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 7 174 - -
Lja3g2803 175 Gene3D Classic Zinc Finger 21 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2803 Lja-Chr3 42395722 42396495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2803 1 157 C2H2 Transcription Factor Family AT2G28710 43.030 3.10e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g2803 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2803 - - gmx:100813871 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2803 3 42395722 42396495 Lja3g2803 3 42395722 42396495 ECH
Lja3g0741 3 7521532 7522481 Lja3g2803 3 42395722 42396495 ECH
Lja3g2803 3 42395722 42396495 Lja3g0741 3 7521532 7522481 PCT