Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2802 ATGGCTGATTCTCACCCCATTGCCAATGACTCACCGAAGATTTCATCGCTCGCAACCGGAGGAGATGCACCTAATGATGCTGGAAATGGTGTCAAGGTGAGTTCTAAGGACCAAAGGGAGGCTCTGCCTGATGAGCCCAAGTGTGTTATATGTGGCCGCTATGGTGAGTATATCTGTGATCAAACTGATGATGATGTTTGCAGCATGGAATGCAAACAATCAATACTGAGCAGAATTGCCAAATCCTCGTCTTCTGTTGGAGGTCCTCCCTTACCCGTAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATTTCAAATCAGGAGCTTCATCTTCAGGTGGTAATCGGGCTGAATTGCTAAGAAAGAAACTTGACATTCGTGTGAACCGTGATGTTGCGGAGCCGGTTTCGACATTCGCTTCCTGTAACCTCCATGAAAAGCTTCTCCACAATATGGAAGCAGCAGGATATGACAAGCCTACCCCTGTCCAAATGCAAGCAATCCCTATTGCTTTGAAGGGGACAAACTTGCTTGTTTTAGCTGATACAGGATCAGGAAAGACTGATTCCTTTCTTATTCCAATAGTTTCTGAATGTGGGATTCAACGTCTGCTGTATGATCCAAATAAGAAGAAGCCTTTAGCTATAGTGTTATCACCTACCAGAGAGCTCTGTATACAGATTGAAGAGCATGCTAAAGCGATGGGAAAGAGTTTACCTTTCAAAACTGCCCTTGTGGTAGGCGGTGATGCAATGCCTGGACAAGTCCACCGCATTCAACAAGGTGTTGAGTTGATTGTGGCAACCCCAGGAAGGCTTATTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTGAAGACTTTAGTTGTGGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGACCAGGTCTTGCAGATATATCAAGCTTTGTCACAACCTCAGGTCTTGATGTTTACTGCAACAATAACTAGTGACATAGAAAAAATGGCAAACTCTCTGGCAAAAGACATTGCGGTTGTAACTGTTGGGAATCCTAATTGTCCAAATAAGGCGGTCAAGCAGATAGCTATCTGGGTTGATTCAAAACAAAAGAAGTCGAAGCTGTTTGAGATCATGCGAAGTGAACAACATTTTAAGCCACCTGTTGTCATATATGTCGGCTCCAGAATCGGGGCAGATCTCCTGGCGGATACGATTAAAGTTGTGATTGGAATTAAAGCAGTTTCAATTCATGGTGAAAAGCCTATGAAGGAAAGGAGAGAAATAATGCAATCCTTCGCAGCGGGCGAGGTCACAGTGATTGTGGCTACTGGAGTATTGGGTAGGGGAGTTGATCTGCTTGGTGTAAGACAGGTAATTGTTTTCGACATGCCTAATTCCATTGACGAGTATGTTCATATGATTGGAAGGGCATCTAGGATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATAGCTCGAATAAGAAAGTTTTTTGTGAACTAATTGGTGTTCTAAAATCTGCTGGTGCACCTATTCCTCGGGAGCTGCTCAATTCACATTATACCGCAGCATTTGTCTCTGGTAGCAAGTGTTCAAAGAAGAGAACGCATAAATGA 1623 0.4368 MADSHPIANDSPKISSLATGGDAPNDAGNGVKVSSKDQREALPDEPKCVICGRYGEYICDQTDDDVCSMECKQSILSRIAKSSSSVGGPPLPVKLPAADECFYVRDTDFKSGASSSGGNRAELLRKKLDIRVNRDVAEPVSTFASCNLHEKLLHNMEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAIVLSPTRELCIQIEEHAKAMGKSLPFKTALVVGGDAMPGQVHRIQQGVELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQVLMFTATITSDIEKMANSLAKDIAVVTVGNPNCPNKAVKQIAIWVDSKQKKSKLFEIMRSEQHFKPPVVIYVGSRIGADLLADTIKVVIGIKAVSIHGEKPMKERREIMQSFAAGEVTVIVATGVLGRGVDLLGVRQVIVFDMPNSIDEYVHMIGRASRMGEEGQAIVFVNSSNKKVFCELIGVLKSAGAPIPRELLNSHYTAAFVSGSKCSKKRTHK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2802 540 Gene3D - 27 85 - -
Lja3g2802 540 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 29 528 - -
Lja3g2802 540 Gene3D - 113 351 IPR027417 -
Lja3g2802 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Lja3g2802 540 MobiDBLite consensus disorder prediction 1 38 - -
Lja3g2802 540 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Lja3g2802 540 Pfam HIT zinc finger 46 72 IPR007529 -
Lja3g2802 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Lja3g2802 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 498 IPR027417 -
Lja3g2802 540 CDD SF2_C_DEAD 360 492 - -
Lja3g2802 540 Gene3D - 352 524 IPR027417 -
Lja3g2802 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Lja3g2802 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 528 - -
Lja3g2802 540 SMART helicmild6 401 483 IPR001650 -
Lja3g2802 540 SMART ultradead3 160 363 IPR014001 -
Lja3g2802 540 Pfam Helicase conserved C-terminal domain 374 483 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2802 Lja-Chr3 42361078 42363812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2802 135 503 Eukaryotic Initiation Factors Gene Family AT3G19760 29.144 3.53e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2802 K19466 - gmx:100784491 748.043