Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2798 ATGGCTCTCAAAGTTGATGATCTGTCCAAAATTGATGCTTCTAAAGAAGCTTGGGTTGTAGTTGTGAAGGGCTGTAAAATTCATGCATCTATCAGACGAACATTGGTATATCGATTCCAGAACCAGTTAACTGAGGGGCGTGTTTATCAAATATCTTTCTTTGGTGTTTGCGAGAATGGAGGCGAATTCAGGACAACCTCTCACTCATACAAGATCAATTTCCAAATGCATTCCAGTGTCAGGCTTATGTCTTCAACCTCTATCACCGGAAACCCATTTTCATTCATGTCTTTGTCTGATGTAGTATTCAAAGAACCTGATACCTCATTCCTTATAGACGTAATTGGTATATTGACTGGGTCTTCTGGAGAGCAACAATTTGAAAAATATGGTAAAATGCAGAAGAGGATAACTCTAGAAATTGAACAGGAAGGAGTTCGTGTTGAAGCTGCATTTTTTGGAAAATATGTCGACGAAATCTTTGGACAATTGGCTTCTGGAGACATGACCAATGCGGTTGTTGTAGTCCAATTTGCAAAGATTAAGCCTTTTAAAGGAAAACCAAGCATTCAAAATGTGTATGGTGCAACTCAGATTCTTTTTAACCCTCCTATTGACGAAGCAGCCTCTGTTCGCGAAAGGTTTTCAACTTCAAGACTCCGGAAAGCTTTTTGTAACGACAATACTTGGTATTACCCGGCTTGCAAATGCAATAAGAAGGTTTACCCAGCGGATGATATGTATTTTTGTGAGGCATGTGTTCGTCACGTTGTTACGACCATTCCTAAGTATAAAATTCGTCTTAGGGTTATGGATTCTAAGGATTCCACCACATTTGTTCTTTTTGACCAAGAAGCGTCTAATCTTTTAAATAAACCTTGCGCTAAGTTAGTTGAGAAGTGTCAGAATTCCCCATACGACTCCCAAATGCCGCAGGAGATTTTGAATTTAATAGATAAGTCTTTTCTTGGGATCTTATTTCTATTGCAACACGCAGGTTCCTCTTCTACAGCTAGGGAAATCAAAGAATTTGCATATTGGCTACTTCAAGTAGATGATTCTATCATTGAAATTCCGTCAGATCTGTTATTTTGGTCCCTCCTCACTTTTCCATCCAAAAATAAACGTTTTCTGGATTTTTCAGAAAATTCATCAACTTCTTCATCTTCTTCCTACATCCTTCCATCATCTTCATCACATTCATAA 1206 0.3831 MALKVDDLSKIDASKEAWVVVVKGCKIHASIRRTLVYRFQNQLTEGRVYQISFFGVCENGGEFRTTSHSYKINFQMHSSVRLMSSTSITGNPFSFMSLSDVVFKEPDTSFLIDVIGILTGSSGEQQFEKYGKMQKRITLEIEQEGVRVEAAFFGKYVDEIFGQLASGDMTNAVVVVQFAKIKPFKGKPSIQNVYGATQILFNPPIDEAASVRERFSTSRLRKAFCNDNTWYYPACKCNKKVYPADDMYFCEACVRHVVTTIPKYKIRLRVMDSKDSTTFVLFDQEASNLLNKPCAKLVEKCQNSPYDSQMPQEILNLIDKSFLGILFLLQHAGSSSTAREIKEFAYWLLQVDDSIIEIPSDLLFWSLLTFPSKNKRFLDFSENSSTSSSSSYILPSSSSHS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2798 401 SUPERFAMILY Nucleic acid-binding proteins 93 217 IPR012340 -
Lja3g2798 401 CDD RPA1_DBD_B_like 113 215 - -
Lja3g2798 401 Pfam Replication factor-A C terminal domain 224 306 IPR013955 -
Lja3g2798 401 PANTHER REPLICATION FACTOR A 1, RFA1 31 298 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja3g2798 401 SUPERFAMILY Nucleic acid-binding proteins 23 84 IPR012340 -
Lja3g2798 401 SUPERFAMILY Nucleic acid-binding proteins 224 322 IPR012340 -
Lja3g2798 401 CDD RPA1_DBD_C 222 323 IPR013955 -
Lja3g2798 401 Gene3D - 206 339 IPR012340 -
Lja3g2798 401 CDD RPA1_DBD_A_like 23 80 - -
Lja3g2798 401 Gene3D - 7 81 IPR012340 -
Lja3g2798 401 Pfam Domain of unknown function DUF223 23 101 IPR003871 -
Lja3g2798 401 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 31 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2798 Lja-Chr3 42321461 42326091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2798 197 290 Core DNA Replication Machinery Family AT5G61000 36.082 1.40e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2798 - - lja:Lj0g3v0149869.1 498.434