Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2797 ATGTCTCAAGGAATCGGGACAAGGCTATTCATCAGCAGACTATCATTTTTCACTTCAAAGGAGCAGCTGAAGACGCTGTTCTCTCCATTCGGAGCAGTTACAGAAGCTACACTTGTGTTGGACCCGAAAACAAAAAGGCCCAAAGGGTTTGGTTTTGTATCCTACGAGTCTGAAATTGAAGCGGAAAAGGCTATCAAAGGCATGAATGGCAGGATAATTCAAGGAAGGCTGATTTTCGTTGAACCTGCAAAGATGACATGA 261 0.4368 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNGRIIQGRLIFVEPAKMT* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2797 86 Gene3D - 2 86 IPR012677 -
Lja3g2797 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lja3g2797 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 81 - -
Lja3g2797 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 81 - -
Lja3g2797 86 SUPERFAMILY RNA-binding domain, RBD 7 84 IPR035979 GO:0003676
Lja3g2797 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lja3g2797 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2797 Lja-Chr3 42313429 42316164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2797 6 80 Eukaryotic Initiation Factors Gene Family AT1G22760 34.667 4.04e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2797 K13195 - gmx:100781760 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2797 3 42313429 42316164 Lja3g2797 3 42313429 42316164 ECH