Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2792 ATGTCTGCAGCTCTCGACATGACCCTCGACGACATCATCAAGAAGAACAAGAAGTCCGCACCCTCCAACCCTAGAGGCCGCAACCGAGCTCCCGGATCCGGACCCGGCCCCGCTCGCCGCATTCCCAACCGCGCCTCCAATCGCGCCGCGCCGTACGCCGCCCCTAAGGCACCGGAGACGGCGTGGGGGCACGACATGTACGCAGATGAACCCGTGCAGGTGGCAGCGTTTCCAGGGCATGGTGGTGGTCGAGCCTCTTCCATCGAAACGGGGACCAAGCTCTACATTTCCAACTTGGATTACGGTGTTTCCAGTGATGATATCAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTACGACAGGAGCGGGAGATCGAAGGGTACTGCAGAAGTAGTCTTCTCACGACGAGGTGATGCTGAAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCGATGAAGATAGAGATTGTGGGCACAAACATTACTACACCTGCTGTTGCACCTGCTGCAAATGGAGCTTTTGGAAATTCAAATGGTGTTCCTAGAAGTGGACAAGGTAGAGGTGGGGCATTTGGAAGGCTGCGTGGTGGTGGTGATGGAGGACGAGGGCGTGGCAATCGCAGAGGAAGAGGACGAGGACGAGGGCATGGAAGGGGTCGTGGTGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCTGAGTCAATGCAATTAAACTGA 765 0.5386 MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRIPNRASNRAAPYAAPKAPETAWGHDMYADEPVQVAAFPGHGGGRASSIETGTKLYISNLDYGVSSDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAPAANGAFGNSNGVPRSGQGRGGAFGRLRGGGDGGRGRGNRRGRGRGRGHGRGRGEKVSAEDLDADLEKYHAESMQLN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2792 254 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g2792 254 SUPERFAMILY RNA-binding domain, RBD 30 166 IPR035979 GO:0003676
Lja3g2792 254 SMART FoP_duplication_2 185 254 IPR025715 -
Lja3g2792 254 MobiDBLite consensus disorder prediction 183 254 - -
Lja3g2792 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Lja3g2792 254 Pfam C-terminal duplication domain of Friend of PRMT1 192 249 IPR025715 -
Lja3g2792 254 Gene3D - 82 240 IPR012677 -
Lja3g2792 254 SMART rrm1_1 93 165 IPR000504 GO:0003723
Lja3g2792 254 MobiDBLite consensus disorder prediction 228 247 - -
Lja3g2792 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Lja3g2792 254 CDD RRM_THOC4 92 166 - -
Lja3g2792 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 253 - -
Lja3g2792 254 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2792 Lja-Chr3 42265082 42268908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2792 91 166 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 7.35e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2792 K12881 - gmx:100783362 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2792 3 42265082 42268908 Lja3g0737 3 7477428 7481912 PCT