Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2777 ATGGAGCTTTTGAACCCTCCTCACCACCACCACCACCGCCGCCGCCACCACTCACCCACATCCATTCTGCACCTTCACTTTCACCCGTTTCCCTCTTCCTCTCCTCCTCCAACTATGCATCAACGCGCTGCTGCTCCTTCCAACCCTGTTGTCGTTGTTCATGTCGCTGTCGGGAAATCGCTCGACAAAGCCGCCACGTTGCTTCAATGGACTTTCAACCACTTTCCCAATTCAGAAATTGTCTTAATCCATGCTTATCAACCTTCTCCATTCATACCCACTTTGTTGGGGAAAATGCTAGCAACTCAGGCTAATCCTGAAACTGTGTCTGCTTTTCGAAGAGAGGAAAAACAACAGACCACGATGCTCATGGACAAGTACTTGAGCATTTGTCGCACAGCTAAGGTTAAGGCTAGCACTATTGTAACTGAAGCTGACCAGGTTCAAAAAGGAATTGTTGATCTGGTTATTAGGCATAATGTTAGGAAGCTTGTGATTGGTGCAGCACCAGAAAATTGGATGAAAGTGAAAAGGAATTCCGGTAAAGCACATTACGCTGCTAAAAATGCTCCCTCATTCTGTGAGATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAACACTAAGTTCATTGACTTCAAGTGCTCAACCTGAGATTGCAGCCGCAGACAGCTTGAGATCTCGATCTTTTCACTATGGTGAGAATGAATTATCCCACTCAGAATATCTCCAACCAAATTCTGCAAGAACTACAATATGTTCTGGAATTAGAAGTTGGGATCAGGGTGAAATCATTGAAACTGAAGCTACTTATTCATCTAAATCAACCAGTTGTAGCAGTCATTGTTCCCCGCAAAATGCTGCTGGGGGTTGGTTAGATACACATTCTGAGTTCATGGAAGAAAGAGTTAATAGTCAACTTATTGAAACCAAAAGAGAAGCCGAGGCAGCAAAAGGTGAGGCATTTGCAGAGCTATTAAAGTGCAAGAGGTTGGAAGTAGAGGCCATGGAGGCCATAAGGAAGGTCAAGTTGTTTGAATCAGCCCATTCATGTGAAGTAAAACTTAGAAAAGAGGCTGAGGATGCACTTAGAGCTACGGTACTCGAACAACAAAAGCTTTCGGATGAAAATGAAAGTATTGCTGGTAAGCTACAAATGACCATGAGAAATATTTCCCAACTAGATAGTCATGCTCAGGAAGTAACCCATAGGCGAGATGAAGTTGCATATGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCTCTTCGGTGGCTTGAGCGGTGGAAAAGTCGCGGACAGGTTGGAACAGCTCATTACAATGGGGCCATTGGGTTTGCTGAAGAATTACCTGAGATTGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAAGAGCTTTAAAATCGCGCAAGGTGGATTTGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAGGAAGTTCCACCAGCAAAACGTGCAAGGACCAGAAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGGCTCCAGCATCCTCATTTATTGAATTTGCTTGGTGTTTGCACTGAAGCCTGGTCAATTGTATACGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTTCGAAGAAGCAACAATTCCCCTTTGACATGGAAGATCCGAGCACGAATGATTGCAGAAATAGCTAGTGCGCTCTGCTTCTTACATTCTTCTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTTCACTTAGTTGCAAGATCTGTGAGTTTGGGTTCAGTAGGCTGGTGACAGAGGAGTCTCTCTATCGTCCTAGTTTCCAATTTAGCTCAGAGATGAAGAGTGCTCACTCGTATACAGATCCACAGTTTCAGCGAACTGGAGTACTAACACCCAAGTCTGACATCTACTCCTTTGGGCTCATTATCTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGCAATGCGATTTCATGTGGAAATTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCTTTAGCTGTGGCAACACGACTGGTCGAACTGGGTTTGCAATGCTGCCAACAAAATCGTAGAGACAGGCCAGAGTTAACACCTACTCTTGTAAGAGAATTAGAGCAGTTGCATGTTTCAGAAGAGCGACCTGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATTGCAGAAGATGGATTTACCTATGAAGGGGACGCCATACGTGAATGGTTGGAAAATGGGCATGATACTTCTCCCATGACTAATTTAAAATTGAATCACCTGCTTCTCACTCCCAATCACGCGGTTCGACTTGCCATCCAAGATTGGCTCTGCAAATATTGA 2499 0.4342 MELLNPPHHHHHRRRHHSPTSILHLHFHPFPSSSPPPTMHQRAAAPSNPVVVVHVAVGKSLDKAATLLQWTFNHFPNSEIVLIHAYQPSPFIPTLLGKMLATQANPETVSAFRREEKQQTTMLMDKYLSICRTAKVKASTIVTEADQVQKGIVDLVIRHNVRKLVIGAAPENWMKVKRNSGKAHYAAKNAPSFCEIWFIYKGKHIWTREASETLSSLTSSAQPEIAAADSLRSRSFHYGENELSHSEYLQPNSARTTICSGIRSWDQGEIIETEATYSSKSTSCSSHCSPQNAAGGWLDTHSEFMEERVNSQLIETKREAEAAKGEAFAELLKCKRLEVEAMEAIRKVKLFESAHSCEVKLRKEAEDALRATVLEQQKLSDENESIAGKLQMTMRNISQLDSHAQEVTHRRDEVAYELSLIQASISTLWQERQQIRRQKMEALRWLERWKSRGQVGTAHYNGAIGFAEELPEIAEFSLSDLQNATCNFSKSFKIAQGGFGCIYKGEMLGRTVAIRKFHQQNVQGPEEFHQEVQVLGRLQHPHLLNLLGVCTEAWSIVYEYLPNGTLQDYLFRRSNNSPLTWKIRARMIAEIASALCFLHSSKPETIIHGDLKPETILLDSSLSCKICEFGFSRLVTEESLYRPSFQFSSEMKSAHSYTDPQFQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAVLVRNAISCGNLSSILDSSAGEWPLAVATRLVELGLQCCQQNRRDRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAEDGFTYEGDAIREWLENGHDTSPMTNLKLNHLLLTPNHAVRLAIQDWLCKY* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2777 832 CDD STK_N 68 202 - -
Lja3g2777 832 SUPERFAMILY Protein kinase-like (PK-like) 472 748 IPR011009 -
Lja3g2777 832 ProSiteProfiles U-box domain profile. 761 832 IPR003613 GO:0004842|GO:0016567
Lja3g2777 832 PANTHER OS10G0100500 PROTEIN 45 831 - -
Lja3g2777 832 Coils Coil 306 326 - -
Lja3g2777 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 832 IPR013083 -
Lja3g2777 832 Pfam U-box domain 762 831 IPR003613 GO:0004842|GO:0016567
Lja3g2777 832 Pfam Protein tyrosine and serine/threonine kinase 493 744 IPR001245 GO:0004672|GO:0006468
Lja3g2777 832 ProSiteProfiles Protein kinase domain profile. 488 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2777 832 Gene3D HUPs 47 169 IPR014729 -
Lja3g2777 832 Gene3D Transferase(Phosphotransferase) domain 1 561 761 - -
Lja3g2777 832 Gene3D Phosphorylase Kinase; domain 1 464 560 - -
Lja3g2777 832 CDD RING-Ubox_WDSUB1_like 766 807 - -
Lja3g2777 832 SMART Ubox_2 765 828 IPR003613 GO:0004842|GO:0016567
Lja3g2777 832 Coils Coil 362 382 - -
Lja3g2777 832 MobiDBLite consensus disorder prediction 24 43 - -
Lja3g2777 832 SUPERFAMILY RING/U-box 759 831 - -
Lja3g2777 832 PANTHER OS02G0152300 PROTEIN 45 831 - -
Lja3g2777 832 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 55 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2777 Lja-Chr3 41485931 41490531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2777 53 829 U-box Gene Family AT2G45910 36.035 3.21e-169 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja3g2777 PK_Tyr_Ser-Thr 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2777 - - gmx:100788846 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2777 3 41485931 41490531 Lja3g2777 3 41485931 41490531 ECH