Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2768 ATGGCAGTGTTCCTGGCCAGAGTGCTCTGCCTCTACATGGCTTCACTCATATCCTTAATGTGGATGGTTCAGGCTAGAATTCCAGGGGTTTACACTGGTGGTGCTTGGCAAGGTGCTCATGCTACCTTCTATGGAGGTTCTGATGCTTCAGGCACCATGGGTGGAGCATGTGGGTATGGAAACTTGTATAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTTTTCAACAGTGGCCTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGCGCCAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACTAACTTCTGCCCTCCGAACTACGCTCTCCCCAACGACAATGGTGGCTGGTGCAATCCTCCTCGCCCACATTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACCGCGCCGGCATCGTCCCCGTCGCCTATCGCCGGGTGCCATGCAGGAAGCCTGGTGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACCTAGTTCTGATCAGCAACGTCGCGGGTGCAGGGGATGTTGTGCGCACCTACGTGAAGGGCACCCGAACCGGTTGGATGCCGATGAGTAGGAACTGGGGTCAAAATTGGCAGTCAAACGCCGTTTTGGTGGGCCAGGCCCTGTCATTCCGTGTCACCGCCAGCGACCGTCGCACGTCCACCTCCTGGAACATTGCTCCGGCACATTGGCAATTCGGTCAAACTTTCACCGGGAAGAATTTCCGGGTCTAA 789 0.5665 MAVFLARVLCLYMASLISLMWMVQARIPGVYTGGAWQGAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKPGGIRFTINGFRYFNLVLISNVAGAGDVVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPAHWQFGQTFTGKNFRV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2768 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Lja3g2768 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Lja3g2768 262 PANTHER EXPANSIN-A15 10 261 IPR002963 GO:0009664
Lja3g2768 262 Pfam Lytic transglycolase 71 158 IPR009009 -
Lja3g2768 262 SUPERFAMILY Barwin-like endoglucanases 35 186 IPR036908 -
Lja3g2768 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Lja3g2768 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lja3g2768 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Lja3g2768 262 Gene3D - 24 164 IPR036908 -
Lja3g2768 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Lja3g2768 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Lja3g2768 262 Gene3D - 168 260 IPR036749 -
Lja3g2768 262 SMART dpbb_1 71 158 IPR007112 -
Lja3g2768 262 PANTHER EXPANSIN 10 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2768 Lja-Chr3 41046403 41048559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2768 1 262 Expansin Gene Family AT2G39700 80.916 6.24e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2768 - - gmx:100809139 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2768 3 41046403 41048559 Lja3g2768 3 41046403 41048559 ECH
Lja3g0713 3 7136539 7139172 Lja3g2768 3 41046403 41048559 ECH
Lja1g2165 1 25181034 25183511 Lja3g2768 3 41046403 41048559 ECH
Lja3g3169 3 60890581 60893879 Lja3g2768 3 41046403 41048559 ECH
Lja3g2768 3 41046403 41048559 Lja3g0713 3 7136539 7139172 PCT