Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2765 ATGGATGATGATAGAGTAGTTGATCCATCACACTGTGCAGGAAAAAATTCTGCATATAGGGATGAAGGGTCTTGCTTGGGGGAGAATGAGAGTGAGAGTGATCAGTTTTCTTCTACCATCCTTAGCTACATAAACCAAACACTTATGGAAGAGGAGGACATGGAGGAGAAGTACAGCATGTTCCAAGATTCATTGGCTCTCAAACATGCTGAGAAATCACTTTATGAGGCTATTGGTCAGAAGTACCCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTACTCTTGACAACTACACCACCTTGGAGAGCCCTGATCAAAGTTTCTCTAGCAACTTCAGTGATTATAGTTTTAGCAGTGACACTAGTTCTGGCACTACCAGTGGCTTTGAATTTGAATCAATAGACTACTTCACTACAAACAATACTGGATTGGGGCTTGATTCCGCATTGCTTAGCAAGAGTTATCTAGTGCAATTTGAGAGAGGTGTAGAGCAAGGAACCATGTTTCTCCCTGTGCAAACTCCATTCATTACTTACCATGACAACACTACCCTTTTCCCTTCTTTCACAAACCCTGCTCCTCATGGGGTAATTAAGTCAGAAAGCCATGAAGAGGAGCATTTTCTAGGGAGGAGACACAGGAAGCAGGAAGATGAAGATGAAGATGAAGCAGAAGAACAACATAGGAGAAGCACAAAGCGTTCAGAAGCGTACATAGATGACACTGAGTTATCAGAATTATTTGACAAGTTACTAGTTCAGGGAACAAGGTTGGGAAATAACTCATCTCCATACATGAGACAGGGTAAAACAGAAGAAGTTGTGAATCTGAGGACACTGTTGATGCAGTGTGCACAAGCTATTTCTTCTGATGATATTTCAACAGCTAAAAGTTTGTTGAAGCAGATTAAGCAGCATTCTTCTCCAATGGGCAATGGAACGCAGAGATTAGCCCATTACTTTGGAAATGCACTTGAAGCACGCTTGGCCGGAACTGGTTCACAGATTTATAGAATGTTATCCTCCAAAAGAACCTCTGCTGCAGACATGATAAGAGCTTACCAAGTGTATTCCTTAGCATGCCCTTTTGAAAAACTTGCAATCATGTTTGCAAACAATTCAATTTGGAATAAGGCCAAGGACGTTGAAACTCTTCACATTGTAGACTTTGGTATTGGTTACGGCTTCAAGTGGCCTGCTTTTATCCATCGTATATCAAAACGACCTGGTGGGTCACCAAAATTGCGCATCACAGGGATAGAGCTCCTTCAACCTGGTTTCAGGCCATTGCAGAGAGTCCATGAAACAGGGAAAAGACTTGCAAGCTATTGCAATCGTTTCAATGTTCCATTTGAATTCAATGCCATTGCACAGAGATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAGTTTCTAGCTGTGAATTGCCTGTTTCGCTCTGAGAAGCTGCTTGATGAGACAGTGGTGGAGGAAAATCCCAGGGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCTGGCATTTTTGTGCACGGCATTGTTAATGGGTGCTATAATGCACCCTTCTTTTCGACACGGTTCAGGGAGGCTGTTTTTCATTACACAGCATTGTTTGATGTGCTTGACACCAACCTTGCCCGTGAAGATCCAATGAGGTTGATGTTTGAGGAGGAGTTTTGTGGAAAGGAGGTGATGAATGTTGTAGCTTGTGAAGGTTGTGAAAGGATTGAGAGGCCTGAGACATATAAGCAATGGCAGCTTAGGATCATGAGAAGTGGTTTTAGGCATCTTCCCTTGGATGACCAAATCATTAATAAGTTAAGGGGTAGGTTGAGAGATGATAAGTACAACACAGCTATGGATCCCAACATCGTCGGAATCGGCTACGAGTTCGACGATGAAGGCAACCTAGTACTTGTCTCCGGTCCCAACCACTCCGACAACCTCGTCAATTTCACTGATCCTTTTCTCGATGTGGGCCCTCTTCCGAACCCTGTCTCCGACTCGGAGCCGGTTCTTCCGTCGTCGGGTTCCGCGGCGGCGGATCCTTCCATGGAGGACACCGATTTCTCGGAAACTGTGAAGTACATCAGCCAGATTCTCATGGAAGAGAACTTTGAGCAGAAGCCATGTATGTGCTACGATCCACTGAGCTTGCAACACACGGAGAGAGCCTTCTATGATGCCTTAGAAGCTGAATTGCCTCTTTCTCCCAATCAACACCCGCTGGATGATTGTTCTGCGCTTTCGATTTCTCAAACGAACTCTCATGTTGTTGTTGCTTCGCAATCTTTGACTAAAACTAGTGATGGGGTTTTGAATTTGGATTTGGATTCTTCTGTATCCAAGCTTTTATCTGAGAATATCTTTAGTGATGTCGATTCTGTGTTGCAGTTTAGAAGAGGGTTAGAGGAAGCTAGTAAGTTTCTTCCTCAGAGTACTCAGTTTTTCACTGGTCTTGAGAGCGGCAAGGTGTCTGAATTGCCTAAGGGAAGGGAAGGAGTCAAGGTGGATCATGGTCCTAGGGAGAATTCAAATTCAAATTCAAATTCAAATGGGTTGTTGAAGAATAGGAAGAATCATGTGCGTGAAGACAGGGATGATGAAGAAAGAAGAAGCAACAAGCAATCTGCGGTTAGTTCTGATGATGGTGGTGAAATATCTGAAATGTTTGACCGGGTGTTGCTTAGTATTGAAAATGTACCACTGTGTGCTGAACCAGTTGTGCAGGAGAGTAGCACAGAAGTGGAGGAACAAGAACAACAACCGCATTCGTCTGATGGATTCAAGCCTCGTTCCAAGAGAAATGGAAGGAAGAAGGAGACAGTGGATATGAGGACCCTTTTGACTCTTTGTGCACAAGCTGTGTCCTCCAATGATTACAGGACTGCTCATGAACTTCTGAAGCAGATTAGGCAGCATTCTTATGAGTTTGGTGATTCATCACAGAGATTGGCTCATTACTTTGCCAGTGGCCTCGAGGCACGCTTGGATGGAGATGGTACTGGAACCAAAATATTCTACATGAGCCTCAAGAAGTTCACTGCTGCTGATTACCTAAAAGCTTACCAAGTTTTTATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTTCAAATAAGATGATTTTGAAGATAGCTGAAAAGGCAGAAACCCTTCACATCATTGATTTTGGTATTCTGTATGGTTTCCAGTGGCCGATTCTCATCAAGATTTTGTCAAAAAGAGAGGGTGGTCCTCCCAAGCTAAGGATAACAGGAATAGAGTATCCTCAAGCCGGTTTTCGCCCGGCAGAAAGAATTGAGGAAACCGGTCGGCGTCTAGCTAGCTACTGTGAGCGTTTTCATGTTCCCTTTGAGTACAAGGCATTAGCATCACGCAACTGGGAAACCATTCGAATCGAAGACCTTGATATTAAAAGCAATGAAATACTTGCTGTGAACACTCTGGTAAGGTTCAAAAATCTGCACGATGAAACAATTGAAGTGAACAGTCCTAGAAATGAAGTTCTGAGTTTAATCAGGAAGATGAATCCGGATATTTTTACGCAAAACATAGTAAATGGATCTTACAATGCCCCTTTCTTCGCCACACGCTTCAAGGAGGCACTTTTCCATTATTCCGCAATGTATGACATGGTTGAGAGGCCTGAGACATACAAACAATGGCAGACTAGGAATGTAAGAGCTGGTTTTAGGCAAATCCCACTGGATAAGGAGATAATGGCCTTATTTAGAGGCAGGTTAAGAGCATGGTACCACAAAGATTTTGTCTTCAATGAAGATCACAATTGGATGCTTCTAGGTTGGAAGGGGCGCATATTGTATGCTTCCACTTGTTGGGTGCCAGCATAG 3870 0.4333 MDDDRVVDPSHCAGKNSAYRDEGSCLGENESESDQFSSTILSYINQTLMEEEDMEEKYSMFQDSLALKHAEKSLYEAIGQKYPSSPPPPPPPPTLDNYTTLESPDQSFSSNFSDYSFSSDTSSGTTSGFEFESIDYFTTNNTGLGLDSALLSKSYLVQFERGVEQGTMFLPVQTPFITYHDNTTLFPSFTNPAPHGVIKSESHEEEHFLGRRHRKQEDEDEDEAEEQHRRSTKRSEAYIDDTELSELFDKLLVQGTRLGNNSSPYMRQGKTEEVVNLRTLLMQCAQAISSDDISTAKSLLKQIKQHSSPMGNGTQRLAHYFGNALEARLAGTGSQIYRMLSSKRTSAADMIRAYQVYSLACPFEKLAIMFANNSIWNKAKDVETLHIVDFGIGYGFKWPAFIHRISKRPGGSPKLRITGIELLQPGFRPLQRVHETGKRLASYCNRFNVPFEFNAIAQRWETIKVEDLKIKKNEFLAVNCLFRSEKLLDETVVEENPRGAVLDLIKKANPGIFVHGIVNGCYNAPFFSTRFREAVFHYTALFDVLDTNLAREDPMRLMFEEEFCGKEVMNVVACEGCERIERPETYKQWQLRIMRSGFRHLPLDDQIINKLRGRLRDDKYNTAMDPNIVGIGYEFDDEGNLVLVSGPNHSDNLVNFTDPFLDVGPLPNPVSDSEPVLPSSGSAAADPSMEDTDFSETVKYISQILMEENFEQKPCMCYDPLSLQHTERAFYDALEAELPLSPNQHPLDDCSALSISQTNSHVVVASQSLTKTSDGVLNLDLDSSVSKLLSENIFSDVDSVLQFRRGLEEASKFLPQSTQFFTGLESGKVSELPKGREGVKVDHGPRENSNSNSNSNGLLKNRKNHVREDRDDEERRSNKQSAVSSDDGGEISEMFDRVLLSIENVPLCAEPVVQESSTEVEEQEQQPHSSDGFKPRSKRNGRKKETVDMRTLLTLCAQAVSSNDYRTAHELLKQIRQHSYEFGDSSQRLAHYFASGLEARLDGDGTGTKIFYMSLKKFTAADYLKAYQVFISACPFKKFAHFFSNKMILKIAEKAETLHIIDFGILYGFQWPILIKILSKREGGPPKLRITGIEYPQAGFRPAERIEETGRRLASYCERFHVPFEYKALASRNWETIRIEDLDIKSNEILAVNTLVRFKNLHDETIEVNSPRNEVLSLIRKMNPDIFTQNIVNGSYNAPFFATRFKEALFHYSAMYDMVERPETYKQWQTRNVRAGFRQIPLDKEIMALFRGRLRAWYHKDFVFNEDHNWMLLGWKGRILYASTCWVPA* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2765 1289 Pfam GRAS domain family 277 617 IPR005202 -
Lja3g2765 1289 Pfam GRAS domain family 950 1220 IPR005202 -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 82 97 - -
Lja3g2765 1289 ProSiteProfiles GRAS family profile. 940 1287 IPR005202 -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 193 236 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 1 37 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 829 888 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 921 944 - -
Lja3g2765 1289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 150 620 IPR005202 -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 845 860 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 79 107 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 198 236 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 665 689 - -
Lja3g2765 1289 PANTHER SCARECROW-LIKE PROTEIN 14 1219 1288 - -
Lja3g2765 1289 PANTHER SCARECROW-LIKE PROTEIN 14 29 90 - -
Lja3g2765 1289 PANTHER SCARECROW-LIKE PROTEIN 14 675 747 - -
Lja3g2765 1289 PANTHER SCARECROW-LIKE PROTEIN 14 150 620 - -
Lja3g2765 1289 PANTHER SCARECROW-LIKE PROTEIN 14 794 1220 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 861 881 - -
Lja3g2765 1289 ProSiteProfiles GRAS family profile. 268 649 IPR005202 -
Lja3g2765 1289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1219 1288 IPR005202 -
Lja3g2765 1289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 90 IPR005202 -
Lja3g2765 1289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 675 747 IPR005202 -
Lja3g2765 1289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 794 1220 IPR005202 -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 830 844 - -
Lja3g2765 1289 MobiDBLite consensus disorder prediction 913 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2765 Lja-Chr3 40902626 40932477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2765 40 643 GRAS Transcription Factor Family AT1G07530 46.715 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g2765 GRAS 5e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2765 - - cam:101504630 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2765 3 40902626 40932477 Lja3g2765 3 40902626 40932477 ECH
Lja3g0706 3 7079104 7081925 Lja3g2765 3 40902626 40932477 ECH
Lja3g2765 3 40902626 40932477 Lja3g0707 3 7082565 7085873 PCT
Lja3g0706 3 7079104 7081925 Lja3g2765 3 40902626 40932477 PCT