Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2764 ATGCTTACCCCAAACTCCTTTCTGCAAGATCTACATGGTCCTAACTCACTATTTTCGGATCTGAACCCAGTAACAAATGGGTTTGAGTTCGATGATAATTCATCTTCTCCTTCTTCTGGCACAAGCTCAAGTGGTGATTCCTCTGATGTGAATAGATTTTCCAATCCTATTCTCAGATACATCAGTGATGTTCTCATGGACGAGGAGGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGAATGTTTAAAGCTCCAAGCTGCTGAAAAATCCTTCTATGATGTTCTTGGCCATGAATATCCTTCATCCAAAGATGAAAACAACATAGACTGCACATACCCAGATGGAAGTTTTGCACCAAGTGTTAGTTTTGAGAGCAATAGCAGCTGCACCACTGATAACTCATATGAATCTGATTGGGGAAACATTGTTGGTGATTTTGAATCTTCTTTGCTACCCCCACAAACCCCTATAGTTGACTCCCTAGAAAATACCAACAATTTAGATCCTTTCCCATTTGGAGAGTCACAGTCTGGTGGCCCTTTTCACAATGGAACCTGGGGTGTCATTCAGAGACTGATGATTGAAGAGGGCTCAGAATCACAACCCAGAGAAAAGAGAAGTCATCAGATAGATGATACTTCTTATGAACAAGAGGGAAGAGAAAGCAAAATTTCAGCTTTTTCTTCTTATATTTCAGAGTCAGCAGAGATATTGGAGGAGGTACTGCTTTATCAAACAGGAAAAAATCAACCTCCCCTTTGTGGTGGTGCTGCTGAACCATCTTCACAGAAAGTTGATTCAGGAAGATCCAAATCCAATGGAAAAGCATCGCGGCGTTCAAAGAAAGGATCCACCAAGTTGACAGCTACAGCTACAAGTGTGGATTTGTGGACACTGCTAACTCAATGTGCACAAGCTGTGGCAAGCTATGACCAAAGGAATGCAAATGAAATCCTCAACCAGATTAGGCAACACTCTTCACCTTCAGGCGATGGACTCGAGCGTTTAGCTCATTACTTTGCCAATGGCCTTGAGACAAGGTTATCTGCTGGGACACCATCATACAAATGTGGCCTTGATGAGGCAACTGCTGCAGACATGTTGAAAGCTTATAAGCTATTTGTAACCTCATCTCCTCTGCAGAGAATGTCAAATTTGTTGACAACAAAAACTATTCTCAAACTAGTGAAGAATGAGAGCAGTGTTCATATCATTGATTTTGGCATCTGCTATGGCTTCCAATGGCCTTGCCTCATCAAATCACTCTCAGAAAGACATGGCGGTCCTCCAAGGCTTCGTGTAACCGGAATTGAGCTTCCTCGGCCCGGGTTTCGGCCGGCAGAGAGGGTGGAGGAGACTGGGCGGCGACTGGAGAACTACTGCAAGAAGTTCAAGGTTCCATTTGAATACAACTGCCTTGCAAAGAAATGGGAGACTATCAAACTTGAGGATCTCAAGACAGACAAAACTGAAATAACTGTTGTTAACTGTTTGTATAGGATGAAGAACCTGCCTGATGAAATTGAGAATGTGAACTGTCCAAGAGATGTTTTGTTGAAGCTGATCAGGAAGATCAATCCAAACATCTTCATCCATGGGATTGTCAATGGAACTTACAATGCACCGTTTTTCCTGACTCGGTTTAGGGAGGCACTGTTCCATTTCTCATCATTGTTTGATATGTTTGAGGCTAATGTGGATCGCGAAGACCCGCAAAGGGTGATGCTTGAGAAAGCGTTGTTTGGAAGGGATGCCATCAATGTGATAGCTTGTGAGGGGGCAGAGAGGGTTGAAAGGCCTGAGACTTACAAGCAGTGGCAGATTAGGAACAGAAGAGCTGGGTTCAAGCAAGTCCGGTTGGATCCCGAGTTAGTGAAACAAGCCAAAGCAATGGTGAAGAGGGAATATCACAAAGATTTTGTAGTGGATGAGGATGGCAAGTGGGTTTTGCAGGGGTGGAAAGGGCGTATTCTGAATGCTATTTCTGCTTGGGTTCCTGCTTAA 2007 0.438 MLTPNSFLQDLHGPNSLFSDLNPVTNGFEFDDNSSSPSSGTSSSGDSSDVNRFSNPILRYISDVLMDEEDDLERKPCMLQECLKLQAAEKSFYDVLGHEYPSSKDENNIDCTYPDGSFAPSVSFESNSSCTTDNSYESDWGNIVGDFESSLLPPQTPIVDSLENTNNLDPFPFGESQSGGPFHNGTWGVIQRLMIEEGSESQPREKRSHQIDDTSYEQEGRESKISAFSSYISESAEILEEVLLYQTGKNQPPLCGGAAEPSSQKVDSGRSKSNGKASRRSKKGSTKLTATATSVDLWTLLTQCAQAVASYDQRNANEILNQIRQHSSPSGDGLERLAHYFANGLETRLSAGTPSYKCGLDEATAADMLKAYKLFVTSSPLQRMSNLLTTKTILKLVKNESSVHIIDFGICYGFQWPCLIKSLSERHGGPPRLRVTGIELPRPGFRPAERVEETGRRLENYCKKFKVPFEYNCLAKKWETIKLEDLKTDKTEITVVNCLYRMKNLPDEIENVNCPRDVLLKLIRKINPNIFIHGIVNGTYNAPFFLTRFREALFHFSSLFDMFEANVDREDPQRVMLEKALFGRDAINVIACEGAERVERPETYKQWQIRNRRAGFKQVRLDPELVKQAKAMVKREYHKDFVVDEDGKWVLQGWKGRILNAISAWVPA* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2764 668 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 18 667 - -
Lja3g2764 668 MobiDBLite consensus disorder prediction 164 186 - -
Lja3g2764 668 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 667 IPR005202 -
Lja3g2764 668 MobiDBLite consensus disorder prediction 28 50 - -
Lja3g2764 668 MobiDBLite consensus disorder prediction 198 223 - -
Lja3g2764 668 MobiDBLite consensus disorder prediction 164 184 - -
Lja3g2764 668 MobiDBLite consensus disorder prediction 254 286 - -
Lja3g2764 668 ProSiteProfiles GRAS family profile. 288 666 IPR005202 -
Lja3g2764 668 MobiDBLite consensus disorder prediction 198 220 - -
Lja3g2764 668 Pfam GRAS domain family 299 665 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2764 Lja-Chr3 40880328 40882334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2764 53 667 GRAS Transcription Factor Family AT2G29060 44.051 4.08e-176 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g2764 GRAS 2e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2764 - - aprc:113855970 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2764 3 40880328 40882334 Lja3g2764 3 40880328 40882334 ECH
Lja3g0703 3 7011865 7015200 Lja3g2764 3 40880328 40882334 ECH
Lja3g2764 3 40880328 40882334 Lja3g0706 3 7079104 7081925 PCT
Lja3g0703 3 7011865 7015200 Lja3g2764 3 40880328 40882334 PCT