Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2755 ATGAGTTTCGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGCGGTTTTTCAGAATATGCTCCTGAGAGAACCACAATGCGTGTACATCCATCTCGGCCAGTTAATAGCAATTCACTGGCTTTTCTGATTACAGTTATTATGCTATTCATTTTATTGAGTTCTCCTCAGATGTCGCATTATCTTTTGCTCTGGCTTGTGATGGCTATCTTTGCGATGGCTACGAGCCTGAGGATGTATGCAGCTTGTCAACATCTTCAAGCGCAAGCCAGGGCTCATGCTGCAGCAGCCTCTGGATTACTAGGCCATAATGAATTACGACTTCATGTGCCGCCATCCATAGCAATCGCAACTAGAGGACGGTTGCATGGACTTAGACTTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTAGATTATGACAGCTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCATCAATGACTGAAGAAGAGATAAATTCCTTGCCTGTTCACACATATAAAGTTGCAGTTCCAACAAAGGATGGAACCGCAGGGTTGGCATCCTCTTCAGGTGCAGCTGAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGCATCAAAGTTTCAGTAGATGAACTGACATGTACCATATGCTTGGAACATGTTAAGAGGGGAGAGCTTGTTCGTAACTTGCCCTGCTTACATCAGTTTCATGCGAATTGCATTGATCAATGGCTCCGTCAACAAGGAACATGTCCAGTTTGTAAATTTAGGATGGGGTTGGGATGGCAGGGAAATGGTGATAGCGAGTCCGATGGTTCAGACATTGTGTAG 825 0.4473 MSFVFRGSRGDIESGFSEYAPERTTMRVHPSRPVNSNSLAFLITVIMLFILLSSPQMSHYLLLWLVMAIFAMATSLRMYAACQHLQAQARAHAAAASGLLGHNELRLHVPPSIAIATRGRLHGLRLQLALLDREFDELDYDSLRALDSDTASSTPSMTEEEINSLPVHTYKVAVPTKDGTAGLASSSGAAEIKQDSEGAEGSIKVSVDELTCTICLEHVKRGELVRNLPCLHQFHANCIDQWLRQQGTCPVCKFRMGLGWQGNGDSESDGSDIV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2755 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 257 IPR013083 -
Lja3g2755 274 SMART ring_2 212 252 IPR001841 -
Lja3g2755 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Lja3g2755 274 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 274 - -
Lja3g2755 274 CDD RING-H2_PA-TM-RING 211 253 - -
Lja3g2755 274 SUPERFAMILY RING/U-box 207 257 - -
Lja3g2755 274 Pfam Ring finger domain 211 253 IPR001841 -
Lja3g2755 274 PANTHER TARGET OF ERK KINASE MPK-1 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2755 Lja-Chr3 40757324 40762015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2755 1 274 C3H Transcription Factor Family AT3G55530 67.391 1.49e-121 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2755 K16283 - gmx:100805406 408.297