Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2754 ATGAACTCGGACACGCAACCCGCTACGACGTCGTCGTATTGGTGTTACAGTTGCAACCGCTTCGTTCACCTCCTCGACCACAACGACGTCGTTTGCCCCCACTGCCAAAGCGGCTTCGTCGAAGAGATCCACGCCGGCCACTCCCCGGCGGTCTCCCTCTTCGCCGACGGCATCCACGCTTCCCGCCGACAAGGCTTCCGCCGTAGACGCCGCAACGCCGGCAGCCGCTCGCCGTTTAACCCGGTGATTGTGCTCCGCGGACCCGGCGACGACGCTGCCGGCGCCGACAACGACGGAAGCAGCTTCGAGCTGTTCTATGATGATGGCGACGGCACCGGTCTCCGACCCCTGCCGCCGACCATGTCAGAGCTTTTGCTTGGCTCGGGATTTGACCGGTTGCTGGATCAATTCTCCCAGATCGAGATTAATGGATTTGGACGGCCAGAGAATCCGCCGGCGTCGAAGGCGGCGATTGAGTCAATGCCGACGGTGGAGATCACGGAGGCGGAGGTGCAGGCGGAGACGCACTGTGCTGTGTGCAAAGACGCGTTTGAGATGGGTTCGGAGGCGCGTGAGATGCCGTGCAAGCATCTCTACCATTCGGATTGTATTCTCCCGTGGCTTTCCACGAGGAACTCGTGCCCGGTGTGCCGCCACGAGCTGCCGTCAGATCAAGGCCAAGGCCAAGGTCAAATCTCCGGTCAGATCGACGAAGAAGCGGTGGGGTTGACCATATGGAGGTTGCCGGGAGGCGGGTTCGCCGTCGGGAGATTCTCTGGCGGGAGAAGAGCCGGTGAGAGCCATTTCCCGGTGGTGTACACGGAGGTGGATGGCGGCGGCGGTGGTGGTTCTAGTAGAATCTCGTTTTCAGTGGGAAGCAGCAGAGTTAGGGAGAGTCGTGGGTTTCGCAGAGTTTTTCGCAATTTCGTGTCTTTCTTTGGGAATAGGAGTCGTAGCATTTCGAATTCGTTGTTCAGTAGAAGCACTCGGAGAAGAAGCACAACTTGGGTCAATGAAGGTTGA 1023 0.5934 MNSDTQPATTSSYWCYSCNRFVHLLDHNDVVCPHCQSGFVEEIHAGHSPAVSLFADGIHASRRQGFRRRRRNAGSRSPFNPVIVLRGPGDDAAGADNDGSSFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQFSQIEINGFGRPENPPASKAAIESMPTVEITEAEVQAETHCAVCKDAFEMGSEAREMPCKHLYHSDCILPWLSTRNSCPVCRHELPSDQGQGQGQISGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEVDGGGGGGSSRISFSVGSSRVRESRGFRRVFRNFVSFFGNRSRSISNSLFSRSTRRRSTTWVNEG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2754 340 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Lja3g2754 340 SMART ring_2 177 217 IPR001841 -
Lja3g2754 340 Pfam Protein of unknown function (DUF1117) 241 327 IPR010543 -
Lja3g2754 340 PANTHER OS05G0110000 PROTEIN 8 300 - -
Lja3g2754 340 CDD RING-H2_RNF181 177 221 - -
Lja3g2754 340 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Lja3g2754 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Lja3g2754 340 SUPERFAMILY RING/U-box 157 224 - -
Lja3g2754 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 300 - -
Lja3g2754 340 Pfam Ring finger domain 176 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2754 Lja-Chr3 40705203 40707292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2754 116 224 C3H Transcription Factor Family AT5G01980 43.119 1.84e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2754 - - aip:107612938 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2754 3 40705203 40707292 Lja3g0691 3 6865325 6867388 PCT