Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2750 ATGATGATACAACAAAGATTTGAGGATTATAACATTAACATGCATGGATTAACAACTCTCCTTCTTCCTCTCACTCTCACTCCCACTCCCAACACCTTGTTTTCTTCATCAAGATCTCTTCAACCATCTTCATCCCTCCAAAACCATGATTACCCATCGATTCCTTCCATACCCAGTTGTAGATTTAGCGTCGGAAGTGGTTTCAATCCCCTGGTGCTCCATTCACGCTGCTACAGCTTCAGGAATCATGAGAAGAAAGGGAGAGGAAGTGGCAATAGAGTTATGGTTGTGAAAGCAAGCCGCGGCGAGTCTCCCTATCAAGTTTTGGGCTTATCTCCATCTGCAACTGTGGATGAAATCAAGAAGGCGTATCGGAAACTTGCTCTCAAGTATCACCCAGATGTAAATAAAGAGGATAAGGCACAGGAAAAATTTATGAGGATAAAACATGCATACAACACATTGCTAAATTCTAGTTCCCGCAGAAAATATGATTCTGGATATAGTGGTGCTGATTCTTCACAAAGAAGACAAAGTTGGAGTCCACAAGCTGAAGAAGAATTTTATGGATTAGAGGACTTCTTTAGGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCCAGTGCTGCTTCACAAGGAAAACCGAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTTGAGTTCCTGGAGAAAGAACTAAATGTTGTGGATCCAAGTGACGGTTATAACACGCCTCAGGGAGGAAATCCATCTAAAGTTTCTGGCGCAGAGACGTCAAACAACAACACTCAAGGTGAAGCTAGCAAAGGAAACAAAAGTGTTCAGGATAACCTTGATGAAATAGAAGCCACTCTGGCCCAGTTAAAAAAGGAACTAGGCTTGTAG 897 0.4236 MMIQQRFEDYNINMHGLTTLLLPLTLTPTPNTLFSSSRSLQPSSSLQNHDYPSIPSIPSCRFSVGSGFNPLVLHSRCYSFRNHEKKGRGSGNRVMVVKASRGESPYQVLGLSPSATVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRRKYDSGYSGADSSQRRQSWSPQAEEEFYGLEDFFRDLQEEFRNWEASAASQGKPKSLWEELAEIGEEFVEFLEKELNVVDPSDGYNTPQGGNPSKVSGAETSNNNTQGEASKGNKSVQDNLDEIEATLAQLKKELGL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2750 298 Coils Coil 275 298 - -
Lja3g2750 298 MobiDBLite consensus disorder prediction 162 182 - -
Lja3g2750 298 PRINTS DnaJ domain signature 140 160 IPR001623 -
Lja3g2750 298 PRINTS DnaJ domain signature 124 139 IPR001623 -
Lja3g2750 298 PRINTS DnaJ domain signature 106 124 IPR001623 -
Lja3g2750 298 MobiDBLite consensus disorder prediction 243 282 - -
Lja3g2750 298 ProSitePatterns Nt-dnaJ domain signature. 145 164 IPR018253 -
Lja3g2750 298 SMART dnaj_3 103 160 IPR001623 -
Lja3g2750 298 CDD DnaJ 105 157 IPR001623 -
Lja3g2750 298 MobiDBLite consensus disorder prediction 162 183 - -
Lja3g2750 298 Pfam DnaJ domain 105 165 IPR001623 -
Lja3g2750 298 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 84 296 - -
Lja3g2750 298 SUPERFAMILY Chaperone J-domain 47 164 IPR036869 -
Lja3g2750 298 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 84 296 - -
Lja3g2750 298 Gene3D DnaJ domain 102 210 IPR036869 -
Lja3g2750 298 ProSiteProfiles dnaJ domain profile. 104 168 IPR001623 -
Lja3g2750 298 MobiDBLite consensus disorder prediction 241 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2750 Lja-Chr3 40564941 40576542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2750 106 166 C2H2 Transcription Factor Family AT1G74250 40.299 4.29e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2750 3 40564941 40576542 Lja3g2750 3 40564941 40576542 ECH