LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2740	ATGGATTACCAAGTCGAGCATGCTGAATTTCTGCATCCTGATGTGGACACATCTGGAAATGCAAGTAAGTTGCAAGTATCAGGAGATAATAATCAACTTGCCTCAGAAGGCTTTCATCCACCTTTGGTTTTTCATGCACCTGCATCAACAGTGGGACAAGCCTCGCCAATTAGTACATCACGTTTCAATAATGGAAGTCAGCAACAGGAAACAGAATTGGTGGAATCAGTTTGTGCTGTAGTGGACCCTCTTCCCAGTACTGAAGAGGGTCAGTTTGAGAAGGAAGAGCAAGATGGCCTAGAGATTGCTGAAGCAACACACATTTCTTTAGATCTAGATATGAACAACGAAGCACTGAATATTAGTGAAGATGGTGGATTAATGGATTCTACTATTTTGGGGGATGATGTGCAGAATGAAGGAGAGAAACTAGATGAATTAACTAGTGTGAACAATGTGACAAATTCTTCCAATGTTCATATTGAAAAGGGAAATGTAGAACAGGGAGAAATGTCTGGGGAAAAAGAAATGCAGAATGAAGGAGAGACATTAGAAAAATTAATAAGTATGAAAAATGCCACGAGTCCTTCCAATATTCTGATTGAAAATGGAGATACGGAAGAGGGAGAAATTTCAGGAGACTTTGAAATGGATGCCGATTCATTTGATATTTCTTCTGCACACATGCCGACTAATTTAACTCAAAATAAAGTCTTGCTCAAAGGTTTCTTGGAAGAAAGTCAAGAAACCACTGCCAAAGAACATGGGAACTCATCTGCAGTGAAGATAGTCGGTGCCAGTAGAAAGAGCGAAGGTGGTTCTGCTTCTGAAGAGAAGAAAGATAAAAACAAGATGCCTGGTCCCGATAGTAAGGAGAAGTGTGGCTCTGGTGCTGATGAGGAGAAGAAAGATAAAAAGAAGCAGCTGATTGATGCTAGTACGAATAAAAAACGCGGTCCTGGTTCCAAGGAGAAGAAAGTTAGAAACAAGAGAAAGAGGCAAGCAAAAAAGAACAGAGAACTAGGTGTGGAAAGGTTGAAGTTGCTTCCAGTACAGAAAGAGAAAACTATCTCTTATTGCCGCCATTATCTCTACGGAAGGTGCAATGAGGGTGACAAATGCCAATTTTCACATGATACGGTCCCGAAGACAAAATCCAAGGCATGTCATCACTTTGCTCGTCACTCTTGCATGAAAGGAGATGATTGCCCATATGATCACGAGCTCTCCAAGTATCCTTGTAACAATTTTGTTTCCAGCGGCTCTTGTTGGAGAGGTGATACTTGTATGTTTTCACATCAGGTACCTGCCAACCAAGATATACCTACACCTTCAAATGTTTGCAAACCACAGGCGGCGTCTCCGCTTAACAATCATGGGTTTAAGTCTATCCAGCAAAACCACTTGAAAGGAATAAGTTCTCTCATCAAACCAGACCATAATATGGTGGCAGATACTTCTCAGAAACAGCCTACCCCAGCACCAAAAGGAATTAGGTTCATCAATGCTGCAAAATTATCACCCAGCCCTAGCACACTGAAACAAGGCATGTTGACACCAAACAAGGAAAGTCTTGTTCAACATGGGACCCTTGCAGATCGAAGTGCATCTGGCACTAGCACTACTCAAAGCATAGTGGAAATTTCTAAGAAATTGCCTGCTGTGGCACCTAAGGGAATTAATTTTCTTTCATTTGGCAAAGGTCCTGTCTGCAGTTTTAAAAGTTCCATGAGCTTCCATGTAAATCGTGAAAATGGTATCAAGTTGCCTCAGGTTGTCAATTTTGGTTTGCCCCACCAAGCAAGTCTGTCTATAAATAAGGATGGCTCTGACAAAGTTAGTGATGGAACCAAAAATGTACCACAAACTAATCTAGCCTCAAATGAGATTTTAAACAAAGTTCTATCTGTGGCAGAAGAAATGAAATCCAAGTTTCCAGGGAAAGCTTCAAAAGATGATTCTGCAAAGGATAACAGCCGTAGTAAGTCAGTTCAAGAGGGAAAGAAGGCATCTAATAATTGTTCAGAATGCCTTGTATCCGGGTATCATAAACTTGCATCAGGGTCAAGTAAAAATGCACTGTCATCAACTTTAGCTTTTGCAGTGGAGCATGAATCAGATATTAAAATGAAATTAATGGTTGGTGGTTCATCTGTATGA	2160	0.4074	MDYQVEHAEFLHPDVDTSGNASKLQVSGDNNQLASEGFHPPLVFHAPASTVGQASPISTSRFNNGSQQQETELVESVCAVVDPLPSTEEGQFEKEEQDGLEIAEATHISLDLDMNNEALNISEDGGLMDSTILGDDVQNEGEKLDELTSVNNVTNSSNVHIEKGNVEQGEMSGEKEMQNEGETLEKLISMKNATSPSNILIENGDTEEGEISGDFEMDADSFDISSAHMPTNLTQNKVLLKGFLEESQETTAKEHGNSSAVKIVGASRKSEGGSASEEKKDKNKMPGPDSKEKCGSGADEEKKDKKKQLIDASTNKKRGPGSKEKKVRNKRKRQAKKNRELGVERLKLLPVQKEKTISYCRHYLYGRCNEGDKCQFSHDTVPKTKSKACHHFARHSCMKGDDCPYDHELSKYPCNNFVSSGSCWRGDTCMFSHQVPANQDIPTPSNVCKPQAASPLNNHGFKSIQQNHLKGISSLIKPDHNMVADTSQKQPTPAPKGIRFINAAKLSPSPSTLKQGMLTPNKESLVQHGTLADRSASGTSTTQSIVEISKKLPAVAPKGINFLSFGKGPVCSFKSSMSFHVNRENGIKLPQVVNFGLPHQASLSINKDGSDKVSDGTKNVPQTNLASNEILNKVLSVAEEMKSKFPGKASKDDSAKDNSRSKSVQEGKKASNNCSECLVSGYHKLASGSSKNALSSTLAFAVEHESDIKMKLMVGGSSV*	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2740	719	Gene3D	-	324	384	-	-
	Lja3g2740	719	MobiDBLite	consensus disorder prediction	644	668	-	-
	Lja3g2740	719	Gene3D	-	385	447	-	-
	Lja3g2740	719	ProSiteProfiles	Zinc finger C3H1-type profile.	383	410	IPR000571	GO:0046872
	Lja3g2740	719	PANTHER	PROTEIN SUPPRESSOR OF SABLE	179	672	-	-
	Lja3g2740	719	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	179	672	IPR045124	GO:0003723\|GO:0045892
	Lja3g2740	719	MobiDBLite	consensus disorder prediction	644	664	-	-
	Lja3g2740	719	MobiDBLite	consensus disorder prediction	321	336	-	-
	Lja3g2740	719	MobiDBLite	consensus disorder prediction	249	340	-	-
	Lja3g2740	719	ProSiteProfiles	Zinc finger C3H1-type profile.	413	436	IPR000571	GO:0046872
	Lja3g2740	719	SUPERFAMILY	CCCH zinc finger	354	379	IPR036855	GO:0046872
	Lja3g2740	719	SUPERFAMILY	CCCH zinc finger	412	435	IPR036855	GO:0046872
	Lja3g2740	719	SMART	c3hfinal6	411	435	IPR000571	GO:0046872
	Lja3g2740	719	SMART	c3hfinal6	383	409	IPR000571	GO:0046872
	Lja3g2740	719	SMART	c3hfinal6	355	380	IPR000571	GO:0046872
	Lja3g2740	719	ProSiteProfiles	Zinc finger C3H1-type profile.	354	381	IPR000571	GO:0046872
	Lja3g2740	719	MobiDBLite	consensus disorder prediction	272	320	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2740	Lja-Chr3	40397153	40401623	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lja3g2740		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2740	-		-	lja:Lj0g3v0252879.1	1289.63