Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2735 ATGAGGAAGCCCGAGAACAAGAGCAAGGTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAGAAGCTGACGAAGTACATGGTGAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGGTTGCAAAGGTGTGGGAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCCCAAGAACAGGACCTCATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCACGCTTGCCAGGGCGAACTGACAATGAAATCAAAAACTTTTGGAACTCCACAATCAAGAAAAGACTCAAGAACTTGTCAACAACCTCAACCTCACCAAATGCAAGCGAATCCACTTCTGAGCCTAACAAAGACCACAACATGGGAGGGTTTAATATTTCTGCACAACATCAATATGCAAGCTACATGCCCATGTTCAATTCATATCCATCATCACTATCAATGCAAACCACCACAGTTCTCAACACCATGATTGAAGGGTTGCCTATGCTGGAGCATGGAATTATAAACATGCCACCTAATGGAGGATACTTCAACAGTACAGGACCATGCTTCTCACAAAGTGGAGTAGTTGAAAATGACAATAATGGAGTGCTTGGGAGTGTAAATATTGGAGTAGAAGGGGATGTGTTTGTTCCTCCTCTAGAGAATTATGTTAGAAATTCTTGTACTAACCATAACCTGATCAGAGTGGAGAGTATGCGCAAGAAAGAAACTAACAATAGTTACTTTGATGACATAAACAACAATATCCTTCATAATAATTGCCACAATAAGAAATCTGAAAATGGAGTAGAGAATTTATTTCAAGAACAGTTAACCATGGGAGAGTGGGACTTTGAGGAGTTGATGAAAGATGTTTCTTCCTTTCCGTTTCTTGATTTTTCAACCTGA 948 0.4135 MRKPENKSKVRKGLWSPEEDEKLTKYMVNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQDLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSTTSTSPNASESTSEPNKDHNMGGFNISAQHQYASYMPMFNSYPSSLSMQTTTVLNTMIEGLPMLEHGIINMPPNGGYFNSTGPCFSQSGVVENDNNGVLGSVNIGVEGDVFVPPLENYVRNSCTNHNLIRVESMRKKETNNSYFDDINNNILHNNCHNKKSENGVENLFQEQLTMGEWDFEELMKDVSSFPFLDFST* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2735 315 SMART sant 64 112 IPR001005 -
Lja3g2735 315 SMART sant 11 61 IPR001005 -
Lja3g2735 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Lja3g2735 315 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Lja3g2735 315 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lja3g2735 315 CDD SANT 67 107 IPR001005 -
Lja3g2735 315 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Lja3g2735 315 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Lja3g2735 315 PANTHER MYB DOMAIN PROTEIN 55 4 314 - -
Lja3g2735 315 MobiDBLite consensus disorder prediction 116 138 - -
Lja3g2735 315 PANTHER MYB TRANSCRIPTION FACTOR 4 314 - -
Lja3g2735 315 CDD SANT 15 59 IPR001005 -
Lja3g2735 315 Gene3D - 66 139 - -
Lja3g2735 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Lja3g2735 315 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Lja3g2735 315 Gene3D - 12 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2735 Lja-Chr3 40293235 40294598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2735 6 315 MYB Transcription Factor Family AT3G08500 46.988 2.90e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g2735 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2735 K09422 - gmx:100785810 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2735 3 40293235 40294598 Lja3g0667 3 6647630 6650560 PCT