Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2733 ATGGGTAGAGAGAGGAGCTCCAACTTCTCTCTAGAATTGGAGTGGAGGAGGGTGAGTGATCGACTTCCTCCAAAGGGATCCCGGTGGGATAATGCTCAAGGGCGTAGAAACCACTATCATAGGTCAGCGGGAGCCCCTAAGCCCAGAGGAGTGGAGAACTTTGGAGTGTCCCATCATTCGCCAAGAAGGAACAAGGGTAAGGAGGGGGATACTCTATTCATTGATGGTCTACCTGATCATATTCACTTCTATCATATTAGAGATATCTTCAAGGAGTTTAACTCCATTGATAGTATATATGTTCCGAGATGGAAGAAGTCTGGTCGTCGTTTTAAGTTTGGGTTCATTCGATTCAAGTCTGTGGAAGAAGCACGCAGAGCCTTTCGAGAACTAAATGGAGCGGTTTTTCCTGGCTGGAAACTGCTGATGTCATGGGCCATTTATCCCCTCAGCTCACAAAGAAAAGATGGGGATCAAGTTAGAGGTATGAAACGTTCGTCGCCGCCGGAGAGAGGACCTGAGATCAAAGAGCGGAGTGCAGGCAGGATATGGCGCAAAAAATATCCCCTCCGAGAAACAAAGGCGGAGCTTATCTTTCTTCCCAGAGACAATGAATTTGAGAGAATCCAACGCTCGATTGTTGCCACCCTACGGAAGGTACAAAAAACAGAGGATATACAGAGCTTCCTGGTGGGTAAAGGATTCAGTGGAATAACCGCCAAAAAATTTGGGGCATCTGAAGTTGTCCTTGAATTCCCAAATCGAGACGAGATGCTACATTTTCTGGCAATTGGAGGGGAACTACTTGGCCATAAATTTGAGTCTTTCTCGTCGGCAACTAATCTCTCAACTCCATCTAGATACTTGAGTTGGCTTGTAATCAGGAACGTCCCCCTGGTTGCTTGGAGCGAGCACTTTTTTAGTACGATTGCCTCATCCTTCGGGACCTATGTCTGTATGGATTCTGAGACTCAAAACTGCCATCGTTATGACATTGCAAGGATCCTTATATCGTCGTCGCAGCCGAAGATATCAAATACATCGGTGGAGGTGAATATTGGAGGGCAAGTGATTGCGGTTAACGTGGAATCAGAGCAAACGTGTGATCACCCTATCGTCTCAAATGATTCAGCTGAGGTTTCCGAGTTCACTACGACAGAAGATAGTGAGGCTCATTTAGATGAATCGAACGCTGGGTCTCACGTGGTTCTAACGCCGGAGGGGGCGACGGTGGAAACCTCTTGCATTGATGATGGCACGTGCCCTACACATGACAACTCCCTGGTTCCCATTGGAGCTATAGTCAGTAGAACACAGGATGATGACGTGAGCTCACTCCCCAGATGGGGAAATATTTTCAAATCGTTGTCTGCCACTGGGGAGCTTGACCTGAGTTTGGGTTGGTCAGAGATCTTTGGGATCCGTGTGTACCAGAATGTCTTTTCAAAAGTAATCGTTGACGGTATCCCTGACGCACCTACTTGGTTTGTTCAGATGTCTGGTAACAACCCACTGAAGTCAACGATTGGCTTATCCTCAAGGGGCCATTTCCCCTTTGATGCGGCGCGACTGATAAGGAGAGGTGCTCCAGACCTCATTCCTTGCCCTAGCCCACGAGAGGTCTATAGGCCACTTTCATTAGACCAGCCCACGATTATGTCTGATGACTCAACCCCCTCTTTGACTATTATTCCTGAAGTAAGTATTCCCCCTACTCCAAAAAGAGGGCGTGGTAGACCAAGAAAAGGGTCTAATGCTAGCGGGTCGGGTGGCCCAAGTTCCATACCCAGGACCCGTGCCCAGGCAAATAGAGAAAGAAGTGGGATGGCTAGCCCTAATCATGAGTCCACCCTCCCTTGCCAATACCTATTATCTCATCCTCTGGGTTCGGGTACCCTTTCATCCTCTTCCCCTGAACCTTCGCTTCCCCCTCCCCCTCGCAGAGGTCGACCACGTAAAAGTGCCTTACCTGAGAGTGTGGTGCCTTCGGTGGGTCTGCAGGTCAAGGATGCCTTGGTGCCAACTGAGAATAACCAGCTGATGCTCTTGCCTCAGGAAGATCAGAATCCTCAAGGTATCTCGACGAGGGGTCGTAGTGCCTGGAGAATGGGTGTGTATCTCGGAATGGTGTGCGATTGCTCTGATGAAACTGCTATTCAAGGTTTTATTGATCAAATTGGGGCCAGGAGATAA 2193 0.4861 MGRERSSNFSLELEWRRVSDRLPPKGSRWDNAQGRRNHYHRSAGAPKPRGVENFGVSHHSPRRNKGKEGDTLFIDGLPDHIHFYHIRDIFKEFNSIDSIYVPRWKKSGRRFKFGFIRFKSVEEARRAFRELNGAVFPGWKLLMSWAIYPLSSQRKDGDQVRGMKRSSPPERGPEIKERSAGRIWRKKYPLRETKAELIFLPRDNEFERIQRSIVATLRKVQKTEDIQSFLVGKGFSGITAKKFGASEVVLEFPNRDEMLHFLAIGGELLGHKFESFSSATNLSTPSRYLSWLVIRNVPLVAWSEHFFSTIASSFGTYVCMDSETQNCHRYDIARILISSSQPKISNTSVEVNIGGQVIAVNVESEQTCDHPIVSNDSAEVSEFTTTEDSEAHLDESNAGSHVVLTPEGATVETSCIDDGTCPTHDNSLVPIGAIVSRTQDDDVSSLPRWGNIFKSLSATGELDLSLGWSEIFGIRVYQNVFSKVIVDGIPDAPTWFVQMSGNNPLKSTIGLSSRGHFPFDAARLIRRGAPDLIPCPSPREVYRPLSLDQPTIMSDDSTPSLTIIPEVSIPPTPKRGRGRPRKGSNASGSGGPSSIPRTRAQANRERSGMASPNHESTLPCQYLLSHPLGSGTLSSSSPEPSLPPPPRRGRPRKSALPESVVPSVGLQVKDALVPTENNQLMLLPQEDQNPQGISTRGRSAWRMGVYLGMVCDCSDETAIQGFIDQIGARR* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2733 730 MobiDBLite consensus disorder prediction 550 565 - -
Lja3g2733 730 MobiDBLite consensus disorder prediction 21 68 - -
Lja3g2733 730 CDD RRM_SF 72 141 - -
Lja3g2733 730 SUPERFAMILY RNA-binding domain, RBD 65 171 IPR035979 GO:0003676
Lja3g2733 730 MobiDBLite consensus disorder prediction 586 620 - -
Lja3g2733 730 SMART rrm1_1 71 144 IPR000504 GO:0003723
Lja3g2733 730 MobiDBLite consensus disorder prediction 549 661 - -
Lja3g2733 730 MobiDBLite consensus disorder prediction 156 178 - -
Lja3g2733 730 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Lja3g2733 730 Pfam Domain of unknown function (DUF4283) 207 337 IPR025558 -
Lja3g2733 730 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Lja3g2733 730 Gene3D - 55 185 IPR012677 -
Lja3g2733 730 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2733 Lja-Chr3 40235441 40237633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2733 68 175 Eukaryotic Initiation Factors Gene Family AT2G23350 29.630 8.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2733 - K12891 lja:Lj2g3v0911720.1 229.95