Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2727 ATGGCAGCAGCAACACCTACCAAGTCTTTCAAATCTCCCTCGAAACCCAATCTACGATCACAATCTACTGCTAAACCCTCACCTTCCATCCCTGCCACACCACAATCCCTCCCTCCTCTTCCTCGCAGATCCAAGCGATCCTCAAAGTCCCTCACCTTCGATTCCCCTAAAGCTTCTCATCAGGGAGCTGAATCTTCCGAATTTCGACTCGAAACTCCGAGAAGAAGGAAGACCAGTGTTGAGGAATCTGGCGAAGGCGGAGTCGTGACCCGTAGAACTGCTACTAGAGGAAGTAGAGGTGGAATTGTTGATACGCCGAAGAAGCGAAATGGGAAGGGGGCGTCAATTGATGCTCAATTTGCTCCGGTATCGCCTGATCAATCGGAAAGTAAGAAGAGGAAGAGGAAGAGGGAGGGTGAGGGCGACGGTGAGGGTGAGGGTGAGGGTGGGAGAAGGGTTGTTACGAGAGCCATGGCTGTGAAAAAAGGGAGACGGGCGAAGAGTGAAGGGGCGGTGCTCAAGAGGCGGGTTTATTACAAGAAAGTGGTTTATGATGGGGGTGAATTTGAGGTTGGGGATAATGTTTATGTTAAGAGGAGGGAAGATGCTTCGTCTGACGATGAAGATCCCGAAGTGGAGGAGTGCCGGTTGTGTTTTAGTTCCGGTGAGGAGACCATGCTTGAGTGTGATGGTTGTTTGGGCGGGTTTCATTTGAAATGCTTGACGCCGCCGTTGAGTGATGTTCCTGAAGGGGATTGGACGTGTGGGTTCTGCGAGGCTCGTAAGATGGGTAAGGAGGTTGATTTCCCAAAGCCGCCGGAGGGTAAGAGACTAGTCAGGACAATGAGGCAGAAGCTTCTCTCCAGTGATTTATGGGCTGCTAGAATTGAGAGCATATGGAAAGAAGTAGATGGCAAGTACTGGTGCCGGGTGCGGTGGTATACAATCCCAGAAGAGACTTCTGTTGGCCGACAACCACATAACCTGAGCAGGGAGCTATATCGAGCCAATGATTTTGCCGACATTGAGATAGAATCTGTCCTTAGACATTGCTATGTCATGACCCCTAAAGAGTATACTAAAGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAGTGGTGAAGCAACTGATAGTGATGAAGACTGGAGTCATGACAAGGAATCATACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAACGGACTATCTCAGCCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTTTTCGGACTTCAGAAGATAGGAACAAAAATAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGGGCAAAGGCCACACTGTTGTTAGCATCATTGCCGAAATCCTCACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCTGATGATCAATGTCTGGGGCGTTGCCTTTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTAGCGGTGATGAGGAGTTTGAGGGCAGAAGTTGATGCAGGAAATATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAGGGTCATATATGAGGCACTGAATGGACATAGAGTCAGCTGGAAAAAGGCTCTCCACGTGCTAAATGAGAGGTTTGTAGAAGGAAAGAGAACTGGGGAAGAGGCTGATAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTCGTAACCAGAAACCAGTCGGTTTTGTACAACATTCTTGACTGGCCTACGAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCTCGTATATCAAGCCGAATGGGCATACATAGGCTTTGCTTTAGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCTAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATAGAGTTTGCTTCAAGAAAGGTTGCAGCCATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTACCGTACAAAGAAGCTAGTTTCAAGTTCTGATTCTTTTACTGCAGGGAAGGGACTTGTTGCAATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAACACTGTTCCAGAATTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTATATAAAACTGGAATGGGAGAAACTACTTTTGAAAAGTTGGCAATGGCAGTTTCACGTCTTTGTACCAGCAATGGAGAGGTGTTTCCCGGATATGATGCCCTCCTGCAAGTTGGCTGCAAGCTAGGCGAGTGCAGAATTATTTTATGTGAAGCAGGGGCCAAGCACAGGCTGCAAAAATTGCAGCTCAATTTCCCAAGCGATGATGTAGCCTTTTCGCTGAGAGACTGCAAAGATCTGCCTTGGTTGTCGAAGTATCTAATGTAG 2607 0.4545 MAAATPTKSFKSPSKPNLRSQSTAKPSPSIPATPQSLPPLPRRSKRSSKSLTFDSPKASHQGAESSEFRLETPRRRKTSVEESGEGGVVTRRTATRGSRGGIVDTPKKRNGKGASIDAQFAPVSPDQSESKKRKRKREGEGDGEGEGEGGRRVVTRAMAVKKGRRAKSEGAVLKRRVYYKKVVYDGGEFEVGDNVYVKRREDASSDDEDPEVEECRLCFSSGEETMLECDGCLGGFHLKCLTPPLSDVPEGDWTCGFCEARKMGKEVDFPKPPEGKRLVRTMRQKLLSSDLWAARIESIWKEVDGKYWCRVRWYTIPEETSVGRQPHNLSRELYRANDFADIEIESVLRHCYVMTPKEYTKASNEGDDVFLCEYEYDIHWHSFKRLADIDNERESGEATDSDEDWSHDKESYSDTDEDVEYEEENIKNGLSQPSTSHQLAANLHKGRFFGLQKIGTKIIPQHIRSHKQTDLERAKATLLLASLPKSSPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLAVMRSLRAEVDAGNIKPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHVLNERFVEGKRTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIHRLCFSPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRTKKLVSSSDSFTAGKGLVAMADVEAAIQEMFQAPHIQVMKHCSRISKIFLTAMVHELYKTGMGETTFEKLAMAVSRLCTSNGEVFPGYDALLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYLM* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2727 868 MobiDBLite consensus disorder prediction 392 434 - -
Lja3g2727 868 Gene3D - 467 663 IPR027417 -
Lja3g2727 868 Gene3D - 664 737 - -
Lja3g2727 868 SUPERFAMILY FYVE/PHD zinc finger 201 264 IPR011011 -
Lja3g2727 868 MobiDBLite consensus disorder prediction 392 414 - -
Lja3g2727 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 274 IPR013083 -
Lja3g2727 868 SMART BAH_4 187 387 IPR001025 GO:0003682
Lja3g2727 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 733 IPR027417 -
Lja3g2727 868 Pfam ATPase family associated with various cellular activities (AAA) 516 661 IPR003959 GO:0005524|GO:0016887
Lja3g2727 868 Pfam PHD-finger 215 260 IPR019787 -
Lja3g2727 868 ProSiteProfiles BAH domain profile. 270 387 IPR001025 GO:0003682
Lja3g2727 868 MobiDBLite consensus disorder prediction 127 151 - -
Lja3g2727 868 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 128 863 - -
Lja3g2727 868 SMART AAA_5 511 665 IPR003593 -
Lja3g2727 868 SMART PHD_3 214 259 IPR001965 -
Lja3g2727 868 MobiDBLite consensus disorder prediction 40 66 - -
Lja3g2727 868 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g2727 868 Gene3D - 159 404 IPR043151 -
Lja3g2727 868 MobiDBLite consensus disorder prediction 1 153 - -
Lja3g2727 868 Pfam BAH domain 294 384 IPR001025 GO:0003682
Lja3g2727 868 ProSiteProfiles Zinc finger PHD-type profile. 212 261 IPR019787 -
Lja3g2727 868 ProSitePatterns Zinc finger PHD-type signature. 215 258 IPR019786 -
Lja3g2727 868 MobiDBLite consensus disorder prediction 67 82 - -
Lja3g2727 868 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 128 863 IPR020793 -
Lja3g2727 868 Pfam AAA lid domain 689 722 IPR041083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2727 2 867 Core DNA Replication Machinery Family AT4G14700 59.841 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g2727 AAA 1.6e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2727 K02603 - gmx:100798547 1359.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2727 3 40171370 40179221 Lja3g2727 3 40171370 40179221 ECH