Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2726 ATGGCTTCGCAAGCTCCTCAACCTCAGCCTCAGCCTCAGCCTCAGGCTCAGGCTCAGGGATATCATCAACATCATCATCACCAACCTTCCTCCATCGAAGAAGTTCGAACCCTCTGGATAGGCGATTTGCAGTACTGGGTCGACGAAAACTACCTCACTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCGATCAAAATCATTCGCAACAAGTTAACAGGGCAACCAGAGGGTTATGGTTTCATCGAGTTCGTTTCTCACGCTGCAGCTGAAAGGGTTCTTCAGAGCTTCAACGGGACTCAGATGCCCGGAACGGAGCAAACTTTCCGGCTGAATTGGGCTTCATTCGGAATCGGAGAGCGTCGTCCTGATTTGGGTCCTGAGCATTCCATTTTTGTGGGTGATCTTGCTCCTGATGTTACTGATTATCTGCTTCAGGAGACTTTTCGGGTGAATTACGCTTCGGTTCGGGGTGCTAAGGTTGTGAATGACGCTAACACTGGCCGCTCTAAAGGCTATGGGTTTGTCAAGTTTTCTGATGAGAATGAGAGGAACCGTGCTATGGCAGAGATGAATGGTGTTTATTGCTCTACTAGGCCTATGCGGATTAGTGCTGCCACTCCTAAGAAGACTGCTGCTACTCAACAACACCCTTATGCTGCTGCTGCACCTGCTCCGAAAACAATATATCCAATCCCTGCGTACACTGCCCCTGTGAACACAGTTCCACCAGATTATGATATAAATAATACTACTATTTTTGTTGGTAATTTGGATCTTAATATCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTCGGAGAGATAGTCTCTGTCAAAATTCAAGCTGGAAAAGGATATGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAGGATAATAGGACAACAAGTGATCCGAATTTCATGGGGCAGGACCCCAACAGCTAGACAGGACATGCCTGGTAGCTGGGCACCACAGATGGATCCAAGTCAATGGAATGCCTACTATGGTTATGGACAGGGTTATGAAGCTTCCTATGCTTATGGGGCTACTCATGATCCTTCATTGTATGCATATGCTGGCTATGCACAATACCCCCAACAAGTTGAAGGTGCTCAAGACGTATCGGCTACCATGGAACAAAGGGACAAGTTGTATGATCCCCTGGCAATGCCTGATGTTGACAAGTTAAATGCTGCATATCTTTCAGTACACGGAAGTGCCATTTTAGGGAAGTCCCTCTGGCACAGTACCTATTCCTCATCCTTACAGCAGCAAGCTTAG 1317 0.4723 MASQAPQPQPQPQPQAQAQGYHQHHHHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKLTGQPEGYGFIEFVSHAAAERVLQSFNGTQMPGTEQTFRLNWASFGIGERRPDLGPEHSIFVGDLAPDVTDYLLQETFRVNYASVRGAKVVNDANTGRSKGYGFVKFSDENERNRAMAEMNGVYCSTRPMRISAATPKKTAATQQHPYAAAAPAPKTIYPIPAYTAPVNTVPPDYDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMQGRIIGQQVIRISWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHDPSLYAYAGYAQYPQQVEGAQDVSATMEQRDKLYDPLAMPDVDKLNAAYLSVHGSAILGKSLWHSTYSSSLQQQA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2726 438 Gene3D - 1 121 IPR012677 -
Lja3g2726 438 Gene3D - 122 222 IPR012677 -
Lja3g2726 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 323 IPR000504 GO:0003723
Lja3g2726 438 SUPERFAMILY RNA-binding domain, RBD 6 115 IPR035979 GO:0003676
Lja3g2726 438 SUPERFAMILY RNA-binding domain, RBD 122 214 IPR035979 GO:0003676
Lja3g2726 438 CDD RRM2_SECp43_like 128 207 - -
Lja3g2726 438 MobiDBLite consensus disorder prediction 1 28 - -
Lja3g2726 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 380 - -
Lja3g2726 438 SUPERFAMILY RNA-binding domain, RBD 229 352 IPR035979 GO:0003676
Lja3g2726 438 CDD RRM1_SECp43_like 37 117 - -
Lja3g2726 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 116 IPR000504 GO:0003723
Lja3g2726 438 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 8 380 - -
Lja3g2726 438 SMART rrm1_1 37 112 IPR000504 GO:0003723
Lja3g2726 438 SMART rrm1_1 252 319 IPR000504 GO:0003723
Lja3g2726 438 SMART rrm1_1 130 204 IPR000504 GO:0003723
Lja3g2726 438 Gene3D - 239 331 IPR012677 -
Lja3g2726 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 208 IPR000504 GO:0003723
Lja3g2726 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 317 IPR000504 GO:0003723
Lja3g2726 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 196 IPR000504 GO:0003723
Lja3g2726 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2726 Lja-Chr3 40165168 40169714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2726 4 329 Eukaryotic Initiation Factors Gene Family AT1G22760 26.888 2.87e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2726 - - cam:101496574 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2726 3 40165168 40169714 Lja3g2726 3 40165168 40169714 ECH
Lja3g2726 3 40165168 40169714 Lja3g0656 3 6535996 6539551 PCT