Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2720 ATGAATAATTCCGGTTTGGGGGGTGGTTTTTTGGCTGGTCCCAGTGGTGGGATTTTGGACCTGGAATCGCCGTTCCGTAGGCACCAACAGACCCAGTTGGGTCATCCATCGGTGACTGGTCAACAGCACATGAATGTTATGAGTGGTTTGGATAATGATCACCCAATTGGCCTGGTTGAAGTGAAAAGTTTGAATGCGGCGTTGAATTTCGGTAAAGGGAAGGCGGTTGCTCTTTGTAATCATGTCAATATTAATGATCTCAGCGAAGATGATGAGCTGGGTTATGCGGAAGACGGGAATTGCGAGCACTTGGATGGGGGCAAGAGCAAAAAGGGGTCTACGTGGCAGCGAATGAAGTGGACAGACAACATAGTTGGGCTTCTTGTAGCTGTGGTGAGCTGTGTGGATGATGATGGCACGATTGGTGCTGGCATGGAACGTGCTAAAAGGAAATATGGGGCTTTACAAAAGAAGGGCAAGTGGAAAACGGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTTTCGCCCCAGCAATGTGAGGACAAATTCAATGACTTGAATAAGAGATACAAGAGGTTAAATGAAATACTTGGAAGGGGAACTTGTTGCCAAGTGGTTGAGAATCCTGCACTGCTTGATTCAATGCCGAACTTGTCAGCTAAGATGAAGGATGCTGTTAGAAAGATACTGAGCTCAAAACACTTATTTTATAAGGAGATGTGTGCCTACCACAATGGGCAAAGGTTACCAAATTCCTATGATCTTGACTTACATGGTTATTCTCTGGAACATGGGAGGGACTCTAGAGATAATAATGGTTCTGAAGACGAAGCTGAGGATAACAATGAAAGCGAGGATGATGGGGTGGATAATGAAATTAATATCAATGCACGTGGGGACGGTGGGAGGATGGAGGAGTTATGCGATAGAAATAAACAGAGTGAGGAGGATGGTCACTTTTGGCCACGATCTGTTCGGATGGATAAATTTCAGGTTGAAATGGACAAGATTTTTCAAGACCCTGCAAAGCCATTGTGGGAACAAAGAGAGTGGATTAAGATGCAGCTGTTGCAGCTTCAAGAGGAAAATGTCGGTTACCAAGCCCAAGCTCTTGAACTTGAAAAACAACGGTTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGGGAGCTGGAGAAATTGAGGTTGGAGAACAAGAAGATGAAATTGGAAAATGAGCACAGGATCTTGAAACTCAAGCAGAAAGAGCACGAGACAGATTGCAACAGGTCTGAGATGTCCTTAGACCCTGCCTCTCATGGAATCAACAGGCCGCAAAGGAGGGAACATATCAACCTGGCCAGACAACAGTAG 1356 0.4513 MNNSGLGGGFLAGPSGGILDLESPFRRHQQTQLGHPSVTGQQHMNVMSGLDNDHPIGLVEVKSLNAALNFGKGKAVALCNHVNINDLSEDDELGYAEDGNCEHLDGGKSKKGSTWQRMKWTDNIVGLLVAVVSCVDDDGTIGAGMERAKRKYGALQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALLDSMPNLSAKMKDAVRKILSSKHLFYKEMCAYHNGQRLPNSYDLDLHGYSLEHGRDSRDNNGSEDEAEDNNESEDDGVDNEININARGDGGRMEELCDRNKQSEEDGHFWPRSVRMDKFQVEMDKIFQDPAKPLWEQREWIKMQLLQLQEENVGYQAQALELEKQRFKWLRYCSKKDRELEKLRLENKKMKLENEHRILKLKQKEHETDCNRSEMSLDPASHGINRPQRREHINLARQQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2720 451 Coils Coil 385 421 - -
Lja3g2720 451 MobiDBLite consensus disorder prediction 436 451 - -
Lja3g2720 451 Pfam Myb/SANT-like DNA-binding domain 117 243 IPR044822 -
Lja3g2720 451 PANTHER F16F4.11 PROTEIN-RELATED 12 425 - -
Lja3g2720 451 Coils Coil 357 377 - -
Lja3g2720 451 MobiDBLite consensus disorder prediction 415 451 - -
Lja3g2720 451 MobiDBLite consensus disorder prediction 277 291 - -
Lja3g2720 451 Gene3D - 120 193 - -
Lja3g2720 451 MobiDBLite consensus disorder prediction 265 316 - -
Lja3g2720 451 PANTHER TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATED 12 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2720 Lja-Chr3 40013662 40015715 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g2720 Myb_DNA-bind_4 7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2720 - - gmx:100798932 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2720 3 40013662 40015715 Lja3g2720 3 40013662 40015715 ECH