Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2717 ATGACTCAACCCCACTGCTCCAATGACTTCAACCATGGTAATTGGTTTGAGTTTGACCTCAATTATTCTCCATCACCTTGCTTCAACCCACCATTCTACTTTCCTTCTTCTAGTTATCATCACCATCATCATCATCATAACCTCACAAGTGGAACAAGCATCTCTTTTTCTCAATCTTTTCCTTCATCTCCTCCTCCAAGAGAAGCTTTACCTCTCCTTAACCTAAGCCCTCCAAAACGTGATGAAGATCTAGAATCTTCCTTCAGTGCCATGGAAGTAAAAAACAAGAAGGAGAAAGAACTTCTAAGCATATCATCATCTCATGTGACGGTGGCTTTGCACTTAGGGCTTCCACGTTCAGCTGATTTGGCTTCAAATATTGAGATTTCAGATCATCATAAAGAAGAAGAAGAAAAAGTAGTGACTGTTGCAGCTGCTTCTAGTTCTGAGTATCCTGCATCAAGTAGTAGAATCAACAGGAGTCAGTATTGGATCCCTACACCTGCACAGATTCTGATTGGTCCAACTCAGTTCTCATGTCCGCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCCCAATACAGAAAAGGGCCAGAGTCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTCCAAACACATTACAAGAGAAAGCACGGAATCAAACCTTTCATGTGCAGAAAATGTTGCAAAGCGTTTGCAGTGAGAGGAGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTGCTCTTGTGGGTCCGATTTCAAGCACAAGAGATCTCTTAAGGATCATATCAAGGCGTTTGGAAATGGACACAAAGCTTATATTAATGGAATTGATGATAATTGTCTTCTTGATCAAGATGATATTGAAGGGGGTTCTGAAGTTGAGCAAGAAAATGATGAGTCTTTGCATAGTCATGGTTGA 1050 0.4162 MTQPHCSNDFNHGNWFEFDLNYSPSPCFNPPFYFPSSSYHHHHHHHNLTSGTSISFSQSFPSSPPPREALPLLNLSPPKRDEDLESSFSAMEVKNKKEKELLSISSSHVTVALHLGLPRSADLASNIEISDHHKEEEEKVVTVAAASSSEYPASSSRINRSQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYINGIDDNCLLDQDDIEGGSEVEQENDESLHSHG* 350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2717 349 Gene3D Classic Zinc Finger 240 317 - -
Lja3g2717 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 343 - -
Lja3g2717 349 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Lja3g2717 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Lja3g2717 349 MobiDBLite consensus disorder prediction 49 63 - -
Lja3g2717 349 MobiDBLite consensus disorder prediction 44 84 - -
Lja3g2717 349 Gene3D Classic Zinc Finger 177 200 - -
Lja3g2717 349 PANTHER ZINC FINGER PROTEIN WIP2 6 343 IPR043584 GO:0003700|GO:0010468
Lja3g2717 349 SUPERFAMILY beta-beta-alpha zinc fingers 244 282 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g2717 Lja-Chr3 39803944 39807281 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2717 1 339 C2H2 Transcription Factor Family AT1G51220 56.447 1.52e-126 364
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g2717 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2717 - - gmx:100789416 450.669
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2717 3 39803944 39807281 Lja3g2717 3 39803944 39807281 ECH
Lja1g1268 1 13056122 13058988 Lja3g2717 3 39803944 39807281 ECH