Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2709 ATGGACTCATCAACAATGGTTGAGGAGCTGGACCTGAACAATCTCAAAGCACTCAAAGTGTTGGGAAAAGGAGCAATGGGCACCGTCTTCCTCGTCCAACACCACCACCACCACCACATGGCCCTCAAGGTGGTCGACAAATCCTCCCTCCACGACGCCGACCGCCGCGCCCGCTGGGAAATCAACGTCCTCTCCCGCCTCTCCCACCCTTTCCTCCCTTCCCTCATTTCCACCTTCGAATCCGATAGCTTGCTATGCTACGCTCTCCCTTACTGCCCCGGCGGCGACCTCAACCACCTCCGCCACCGCCAAGTCGACCACGTCTTCTCCCCCGCCGCAATCCGCTTCTACCTCGCCGAAATCCTCTCCGCCCTCCACCACCTCCACTCCCTCGGCATCGCCTACCGCGACCTCAAGCCCGAAAACGTCCTCATCCAGCAAAACGGTCACGTCACCCTCACCGATTTCGACCTCTCGCGCGTCCTCTCCCATAAAACAATAACCGCCCAAACAGAAATCATAACCGTCGCCGACACGCCCCGTAAATCTCGCCGCTGGAACAGGAATCCGTTATTCTCCAACGGCCCCACTACCAAGTCAGCACGAGTCAACCCGGTGAGCCGGCGAACCCCGAGTTACTCCGACGGGGAGCGGTCTAACTCGTTCGTCGGAACAGAGGAGTACGTCGCGCCGGAGGTTGTTCGTGGCGCCGGGCACGAGTTCGCCGTGGACTGGTGGGCACTCGGGGTGCTGACTTACGAGATGCTGTATGGGACGACGCCGTTTAAGGGGAGGAACCGGAAGGAAACGTTTCGGAACGTGCTGGTGAAGGCGCCGGAGTTCGTGGGGAAGAAAACGGCGCTGACGGACCTCATATCGCGGTTGCTGGAGAAGGATCCGGTGAAGCGATTGGGTTACGTTCATGGCGCTAGCGAGATCAAGGAGCATGAGTTCTTCAGAGGGGTCAAGTGGGACATGCTAACGGGGGTGGCGCGGCCGCCGTTTATTCCATCGGGAGACGAGGCTGTCTCGGCGGCGGATCGGTGCTCCGCCGGTGTGGATATAAGGGAGTATTTTAAGAGGTTGAACTCTCCGCCGTCGTTGCCCCCTTCGCCGTTACCGTCACCGGCTTGTTCTCCGAGTTTTTCTTTTGCTGAATTCTGA 1164 0.5919 MDSSTMVEELDLNNLKALKVLGKGAMGTVFLVQHHHHHHMALKVVDKSSLHDADRRARWEINVLSRLSHPFLPSLISTFESDSLLCYALPYCPGGDLNHLRHRQVDHVFSPAAIRFYLAEILSALHHLHSLGIAYRDLKPENVLIQQNGHVTLTDFDLSRVLSHKTITAQTEIITVADTPRKSRRWNRNPLFSNGPTTKSARVNPVSRRTPSYSDGERSNSFVGTEEYVAPEVVRGAGHEFAVDWWALGVLTYEMLYGTTPFKGRNRKETFRNVLVKAPEFVGKKTALTDLISRLLEKDPVKRLGYVHGASEIKEHEFFRGVKWDMLTGVARPPFIPSGDEAVSAADRCSAGVDIREYFKRLNSPPSLPPSPLPSPACSPSFSFAEF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2709 387 Pfam Protein kinase domain 17 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2709 387 Pfam Protein kinase domain 215 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2709 387 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Lja3g2709 387 PANTHER FLIPPASE KINASE 1-RELATED 10 366 - -
Lja3g2709 387 SMART serkin_6 15 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2709 387 Gene3D Phosphorylase Kinase; domain 1 15 95 - -
Lja3g2709 387 Gene3D Transferase(Phosphotransferase) domain 1 217 338 - -
Lja3g2709 387 SUPERFAMILY Protein kinase-like (PK-like) 12 375 IPR011009 -
Lja3g2709 387 MobiDBLite consensus disorder prediction 186 219 - -
Lja3g2709 387 Gene3D Transferase(Phosphotransferase) domain 1 96 168 - -
Lja3g2709 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lja3g2709 387 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 10 366 - -
Lja3g2709 387 ProSiteProfiles Protein kinase domain profile. 15 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2709 387 MobiDBLite consensus disorder prediction 185 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2709 Lja-Chr3 39403896 39405418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2709 8 387 AGC Kinase Gene Family AT3G20830 57.855 6.01e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g2709 Pkinase 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2709 - K08286 zju:107412708 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2709 3 39403896 39405418 Lja3g2709 3 39403896 39405418 ECH
Lja3g2709 3 39403896 39405418 Lja3g0636 3 6390448 6392037 PCT