Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2706 ATGGATTCAGATCTTCAGCAACAGCCACCACAGATGAATCCTTCACCTGGTTTAACACGGTATCGATCAGCACCGAGTTCATATTTCTCCGACATCATCGACCGCGAATTCTACGAGCACATTTTCAACAAACCGTCAAGTCCCGAAACAGAGCGCGTCTTCTCACGGTTCATGAACAGTTTCAGCGGCGGTGATGGTGGTGGCGGCGCGACGGCGGAAGAGGATCATCCACTGAAAATCTCAGCAGATTCAGTGAAACGAGAGCAGGATCAACAGGGAATGAACAATGAAGTTCTACAGAGTAGTACTGAGATTATCAATGATTATGGCAACTCTGTTCCTCATTCTCAACAGAGCTTTTACCAAAGCGCGGTGAAACCACCGTTGCCGAATCACTATCTTCAATCTGGTGGTGGTGGGAATGGCAATTCTGGTCTCATCAGACATAGTAGTTCACCTGCAGGACTGTTTTCTCAAATCAACATTGAAAATATGGCAGGCTATGCTGGTGTGAGGGGCATGGGAACTTTGGGAGCTGTTAAAAATTCTCTTGAAGGAGCTAAATTTTCTAGTGCAAGGAGGTTGAAGAACCAACCAAACTACTCCTCAGGGATGATGTCATCAATAGCTGAAATTGGGGACAGAGGCAATAGAGAAAATAATCCAGACAGTGAAGCTTTTGCTGAAGGAATTGGTAATGATTTCATCACAGGTTTCCCAGTTGGTGCTTGGGATGACTCTGTAATGATGTCTGACAATGTTAGTGGTCTGAAAAGATTTAGAGATGATGATGATGCTAAACCATTTTCTGGTTTGAATGGAGCTGAGACTCGGAATGAAACAGGAGGACAGTCTTCTTCTTTGGTTCATCAGATGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATTGAGAAGTTCCTGCATTTCTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGTTTTGCCACTCACCCCAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTGGATTACATCAAGGACCTTCAAAAGCAAGCTCAGACGCTTTCAGACTGTCAAGCAAAGTGTACATGTTCACACAAGCAGCAATAA 1188 0.4444 MDSDLQQQPPQMNPSPGLTRYRSAPSSYFSDIIDREFYEHIFNKPSSPETERVFSRFMNSFSGGDGGGGATAEEDHPLKISADSVKREQDQQGMNNEVLQSSTEIINDYGNSVPHSQQSFYQSAVKPPLPNHYLQSGGGGNGNSGLIRHSSSPAGLFSQINIENMAGYAGVRGMGTLGAVKNSLEGAKFSSARRLKNQPNYSSGMMSSIAEIGDRGNRENNPDSEAFAEGIGNDFITGFPVGAWDDSVMMSDNVSGLKRFRDDDDAKPFSGLNGAETRNETGGQSSSLVHQMSMPNTSSEMAAIEKFLHFSDSVPCKIRAKRGFATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQTLSDCQAKCTCSHKQQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2706 395 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g2706 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 387 IPR036638 GO:0046983
Lja3g2706 395 SMART finulus 330 380 IPR011598 GO:0046983
Lja3g2706 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 393 - -
Lja3g2706 395 Gene3D - 326 395 IPR036638 GO:0046983
Lja3g2706 395 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 393 - -
Lja3g2706 395 MobiDBLite consensus disorder prediction 274 289 - -
Lja3g2706 395 Pfam Helix-loop-helix DNA-binding domain 330 375 IPR011598 GO:0046983
Lja3g2706 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 374 IPR011598 GO:0046983
Lja3g2706 395 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2706 Lja-Chr3 39183883 39187509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2706 4 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.196 3.72e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g2706 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2706 - - gmx:100805812 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4072 3 80100042 80102845 Lja3g2706 3 39183883 39187509 ECH
Lja3g2706 3 39183883 39187509 Lja3g2706 3 39183883 39187509 ECH
Lja3g0633 3 6337161 6341264 Lja3g2706 3 39183883 39187509 ECH
Lja1g1251 1 12881581 12885176 Lja3g2706 3 39183883 39187509 ECH
Lja5g2271 5 39627015 39630348 Lja3g2706 3 39183883 39187509 ECH