Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2681 ATGGATTCCGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAAACCGACGATAATGCTCCCATGGATTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGACGCCGACGATTCCGACCGGATTCAGTCTCGCCGCCCCGAGCAAAATTTTACTATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAAGATGACATCACGAGAGTAGCGGCAGTTCTTTCGATACCAAGAGTTTCTGCAAGCATCCTGCTTCGTCATTATAATTGGAGTGTTAGTAAAGTGCATGATGCCTGGTTTGCTGATGAACAACAAGTTCGGAAAGCAGTTGGTTTGTTGGAGAAGCCAGTTTTCGAGAATCATAAGGCTAGAGAGGTTACATGCGGCATCTGTTTTGAAAACTATCCTCGTGCTAGGATTGAAACTGCTGCTTGTGGTCATCCCTACTGCTTTCAATGCTGGGCTGGATATATTGGCACTTCAATTAATGATGGTCCGGGATGTTTGATGTTGAGATGTCCTGATCCCGCTTGTGGTGCTGCCATTGGTCAAGATATGATTAATCTTTTAGCATCTAATGAAGATAAAGAGAAGTATGACCGTTACCTTCTTAGGTCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAATGGAAATTTTGATGTATCTTGCCTTTGTGCATATAGCTTCTGCTGGAATTGTACTGAAGAGGCTCACCGCCCAGTGGATTGTTGTACTGTGTCAAAATGGATAATGAAAAACAGTGCCGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCTAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGCACTCCACCTTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACAGGTGGTTTCTATGCTTGCAACCGTTATGAAACTGCTAAACAAGAAGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAGGCTCTTGCAGATCTACACCAGATGCAAACTATTCATCTTGAGAAACTCAGTGACACCCAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAATGCAGGCGAGTCCTGAAGTGGACATATGCATATGGATACTATTTACTCGAGCAAGAACATGCTAAAAAACAATTCTTTGAATACTTACAAGGTGAGGCAGAATCTGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTTAACGCTGATGGCCCATCTAAAGACTTCAATGACTTCCGCACTAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGTAACGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAAGGGAGAGGTGGTAGAGGAAAGGGAACTAACCGATCTAGCATGTCCAACAGAATGACTGATGACAATCATTGGTCTTGCGAAGCTTGTACCTACGCAAATCTCAAGTCTGCCACCACATGCCAGATGTGCAATCAACCGCGTCGATGA 1776 0.4426 MDSEDDMHDANDVESLDDDFYSGETDDNAPMDYYSDYDDDADDYFDDADDSDRIQSRRPEQNFTILRELDIRQRQEDDITRVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEQQVRKAVGLLEKPVFENHKAREVTCGICFENYPRARIETAACGHPYCFQCWAGYIGTSINDGPGCLMLRCPDPACGAAIGQDMINLLASNEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGNGNFDVSCLCAYSFCWNCTEEAHRPVDCCTVSKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTIHLEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLLEQEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKGTNRSSMSNRMTDDNHWSCEACTYANLKSATTCQMCNQPRR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2681 591 MobiDBLite consensus disorder prediction 524 541 - -
Lja3g2681 591 ProSiteProfiles Zinc finger RanBP2 type profile. 563 591 IPR001876 -
Lja3g2681 591 ProSitePatterns Zinc finger RanBP2-type signature. 567 586 IPR001876 -
Lja3g2681 591 SUPERFAMILY RING/U-box 209 278 - -
Lja3g2681 591 SUPERFAMILY RING/U-box 290 338 - -
Lja3g2681 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Lja3g2681 591 SUPERFAMILY Ran binding protein zinc finger-like 563 590 IPR036443 -
Lja3g2681 591 SMART zf_4 565 589 IPR001876 -
Lja3g2681 591 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Lja3g2681 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 539 IPR031127 GO:0004842|GO:0016567
Lja3g2681 591 Gene3D - 561 591 - -
Lja3g2681 591 SMART ibrneu5 209 271 IPR002867 -
Lja3g2681 591 SMART ibrneu5 284 345 IPR002867 -
Lja3g2681 591 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Lja3g2681 591 MobiDBLite consensus disorder prediction 1 59 - -
Lja3g2681 591 MobiDBLite consensus disorder prediction 524 560 - -
Lja3g2681 591 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Lja3g2681 591 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Lja3g2681 591 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g2681 591 SUPERFAMILY RING/U-box 136 221 - -
Lja3g2681 591 Pfam Ariadne domain 358 520 IPR045840 -
Lja3g2681 591 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
Lja3g2681 591 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 539 - -
Lja3g2681 591 Gene3D - 267 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2681 Lja-Chr3 38387560 38397042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2681 17 590 ARIADNE family AT1G65430 69.244 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2681 K11968 - gmx:100810427 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2681 3 38387560 38397042 Lja3g0613 3 6050570 6058325 PCT