Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2637 ATGGCCAACCCTGATGAAGACTGTGCCCTCTACGTGGAGGTGGCGAAGAGGCACTACAGAGGAGTCCGCCAAAGACCGTGGGGCAAGTTCGTCGCCGAGATCCGGGACCCGAACAAGCGCGGATCTAGGCTTTGGCTCGGAACATTCGACACCGCCATCGAAGCCGCCAAAGTTTACGACCGAGCCGCGTTTACCTTTCGCGGCTTGGAGGCGGTTCTCAACTTCCCGTTTGAAGCCGGTGTCGTTGACCGGAAGCACCGCCCGGAAGAGGAGGCGGAGACAAGAGCTGCAGGGAAGGCGGAACACGGAATGTTAATCAATGAGGGAGAAGTATTGATGTATCACCATTTCAATAATCTATGCACGAGTGAACATGGCAGGCTCTTGGTAAAGCAGAGTTTAGTCACATGTTCTAGTATTGCGGGGGTAATAGACATCAAAACCTGTAAGACGAACTTCAAGGATTGGTTCAAGCAAATCTGGAGGGAGCCGCATAATCCACGTGAAAAGCATTTCGATGATTTCAGAACTCTTATGAACTCCCCCGACTTTAGGATCTTCTGTTACAATATCTACCAGTCTTCCAAGCACGTCCCGTTGCTACTGACACCTCGTGTTTCTCAAGATACCATCTCTTTAAGAAGCTCTGATAAGGTGGTCTTTGAGATGAATAAGATGGTTGCAATCTCTGAATCAAAGCTTCTTAAAGACGTTATTGAATGTCACCCAAATGAAGATGAGATTCCCTTGCCTCGAGTATCCAGCCTCATCCTCCCGGAGGTCATCTCCTTTTGCGAGAAGAAACTCAAATTCGATCAGCTTTTTAAGAGCATTGCGGAGATTTTGAAGACTGTTTTCATCCCCTACAATGCTTGGGTCACACGCTTCGTCAACAATAATCATAGCATTTTCTCTCACTTGCATGATGCTGCGAACTTTCTCAACATTCCAAGCCTTTTTGAGTTTACATCACTTTTCACTGGACTGGAAGATAGAGGTGAAAACGAAAACAAAATTCAAGAGACATCGAAGTGGTATTCAGCATTATCCATGCTTTCAACTATGGGGATTGAGATTGGAGAACCTTCTTATATTTCGCTAAATTTGGGATAA 1113 0.4636 MANPDEDCALYVEVAKRHYRGVRQRPWGKFVAEIRDPNKRGSRLWLGTFDTAIEAAKVYDRAAFTFRGLEAVLNFPFEAGVVDRKHRPEEEAETRAAGKAEHGMLINEGEVLMYHHFNNLCTSEHGRLLVKQSLVTCSSIAGVIDIKTCKTNFKDWFKQIWREPHNPREKHFDDFRTLMNSPDFRIFCYNIYQSSKHVPLLLTPRVSQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPLPRVSSLILPEVISFCEKKLKFDQLFKSIAEILKTVFIPYNAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSLFTGLEDRGENENKIQETSKWYSALSMLSTMGIEIGEPSYISLNLG* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2637 370 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Lja3g2637 370 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 Gene3D AP2/ERF domain 17 78 IPR036955 GO:0003700|GO:0006355
Lja3g2637 370 SUPERFAMILY Skp1 dimerisation domain-like 291 343 IPR036296 GO:0006511
Lja3g2637 370 SMART skp1_3 208 316 IPR001232 GO:0006511
Lja3g2637 370 Pfam Skp1 family, tetramerisation domain 210 268 IPR016073 GO:0006511
Lja3g2637 370 SUPERFAMILY POZ domain 210 268 IPR011333 -
Lja3g2637 370 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 94 - -
Lja3g2637 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 12 94 - -
Lja3g2637 370 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Lja3g2637 370 Gene3D Potassium Channel Kv1.1; Chain A 205 349 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2637 Lja-Chr3 36207535 36209516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2637 13 121 AP2-EREBP Transcription Factor Family AT5G47230 52.066 6.25e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g2637 Skp1_POZ 1.9e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2637 K09286 - lja:Lj0g3v0273719.1 731.865