Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2630 ATGGCATTGAGCACTTACTTCAACTTGGACTTTCAGCAAACTCCTAGCTCTTTCCTTGAAGCAACACCAACACTTAATTTACCACAACACCACCTCTTTGCTTATCCAGATGAAAATTTCTTCTTTCCAAATAGCACTTTTGTTGACCATGATGCAAGTTTCCTCTACCCTGCAGATGATATCTACTACCCTCCTCTGTTTCAGTGCAATTCTTCTGCTTATGACCCCACCAATTGCAATATCTCACTCTCTGACAATGATATTGTATTTCCATTCCTAACTCAAGATGATTACCAAAACCTCCTTCCATGTCCAAAGCGCCAAAAGTGCTTCTTCAATGACAATTATGGCCTTGTGCCAACCAATTTGTTTGATTCCTTGCAAGCAGAGGAACCGCCACTATCAGAAGCAGAGCTTTTCTATGCAATGGCGCCAGAGTTCCAAATTCAACAACTTCCACAGTGTGGTAATTTTGTGGCAAATAATGATGAGAATAAGAAGAGTAAGGAGAACGAGAAAATCATATCTGCTCAGAGCTTAGCAGCAAGAGAAAGAAGGAGGAAGATCAGTGACAAAACACAGGAGCTAGGGAAGATTGTTCCTGGTGGGACTAAGTTGAACACTGCTCAGATGCTGAATGCAGCTGGCAAATACATTCAGTATTTGCAGGCTCAAGTTCAGATGCTTCAACTTATGAACACACTCCAAGAAGAAGAGGAGGTAGCACTAGCACCTTCAATTGATGAAGATCTTCAGGCACTGTTTGTCTCACCCTTGATTCAAGAGAAGATGTACTTGGAGGAGAAGTGCTTTGTTCCAAAAGACTTTGTTACCACTTTAACAAATCTTGATAATCTTCAATCAAGTCCTTCCATCCTTCAAGATCTTAATCAGTTGATTGGGACTTGTCACAATAAGAAGAAAGCAAAGCAAGAGTAA 939 0.4079 MALSTYFNLDFQQTPSSFLEATPTLNLPQHHLFAYPDENFFFPNSTFVDHDASFLYPADDIYYPPLFQCNSSAYDPTNCNISLSDNDIVFPFLTQDDYQNLLPCPKRQKCFFNDNYGLVPTNLFDSLQAEEPPLSEAELFYAMAPEFQIQQLPQCGNFVANNDENKKSKENEKIISAQSLAARERRRKISDKTQELGKIVPGGTKLNTAQMLNAAGKYIQYLQAQVQMLQLMNTLQEEEEVALAPSIDEDLQALFVSPLIQEKMYLEEKCFVPKDFVTTLTNLDNLQSSPSILQDLNQLIGTCHNKKKAKQE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2630 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 296 - -
Lja3g2630 312 CDD bHLH_AtbHLH_like 178 230 IPR045239 -
Lja3g2630 312 Pfam Helix-loop-helix DNA-binding domain 180 223 IPR011598 GO:0046983
Lja3g2630 312 Gene3D - 164 242 IPR036638 GO:0046983
Lja3g2630 312 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 296 - -
Lja3g2630 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 237 IPR036638 GO:0046983
Lja3g2630 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Lja3g2630 312 SMART finulus 179 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2630 Lja-Chr3 36107170 36109014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2630 144 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 40.881 9.04e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g2630 HLH 7.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2630 - - lang:109363529 245.358