Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2613 ATGCCATTCTCCTCTGCCCAAAACTTTTTCCAAATGGGAAATTTTCCATATAGCAGCTTTTTGTCTAGTGATATTTTGCCATCTCTTGGAGCCCGAATCAACCAAGAAACTAGGCTTCGAAGTTACATAATTTCCCCTTTCAGTCCACGTTACAGGGCTTGGGAGATGTTGTTGATTGTCCTGGTCATTTACTCTGCATGGATTTGCCCATTCGAATTTGCCTTTCTTCCTTATAAGCAAGACGCACTCTTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGCTGACATTCTTTGTTGCATATCTTGATAGCCACTCTTACCTTCTTGTTGATGATCCTAAGAAAATTGCAGTGAGGTACATATCTACCTGGCTCATCTTTGATGTGTGTTCAACTGCACCTTTTCAATCCATCAGCCTCCTCTTCACTGAACATAGTAGCGAGATTGGCTTCAAAATTCTCAACATGCTTCGGTTATGGCGTCTGAGACGAGTTAGTTCTCTGTTTGCAAGACTCGAGAAGGACATTCGCTTTAATTACTTCTGGACAAGGTGCTCAAAGCTCATTGCTGTTACCTTGTTTGCTGTACACTGTGCTGGATGCTTTAACTATGTGATTGCAGATAGGTACCCTGATGCCAAAACGACCTGGATTGGTTCAGTGTACCCAAATTTTAAACAGCTAAGTCTTTGGGATAGATATGTTATATCTATGTATTGGTCCATTGTCACACTTACTACCACTGGCTATGGAGATTTGCATGCTGAAAACACCAGAGAGATGTTGTTTGATATCTTTTACATGTTGTTCAACTTGGGATTAACATCATACATCATTGGAAACATGACAAATCTCGTAGTCCACTGGACAAGCCATACAAGAAACTTTAGAGATACAGTAAGAGCAGCTTCAGAATTTGCATTGAGAAATCACTTGCCACATGATGTACAAGATCAAATATTGTCACACTTGTGTTTGAGGTTCAAAACCGAAGGATTGAAGCAACAAGAAACAATAAATGGCATGCCTAAGGCCATTCGTGCGAGCATTGCATACCATCTATTTTTCCCAATTGTGCAGAATTCCTATCTCTTCCAAGGAGTCTCACATGACTTTCTCTTCCAACTGGCTACTGAGATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTTATACTACAAAATGAGTCTCCAACGGACCTATACATGATAGTTTCAGGGGCAGTGGATCTCATTCACAGTGTTGATGGTCATGATCAAGTTATGAAGAAGGCAATTGCAGGAGATACATTTGGAGAAATTGGAGTATTATACTATAGGCCACAACCTTTCACAGTTCGGACCACAGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCATTGATGAATGCCATACAAGCGAATCCAGAAGAAGCACCAGTTATAATGAAGAATCTTTTAATGATGATGCTGAAGGAGCATGAAGAGCTTGGTTTTGAATATCCAGCTACTGACCCTGGATTAGCGCTTCACCAAATGCATCATGGGAACAACATTAGAGGATGTTTTTGTCATGGATGTACAAAAATTCTAGATTCACATGGGGAAACCAGATTGCATGACATGATTTTTGAGAATGGCAAAATAGATCTTAATGATGCTGATGCAAAGAGAGGTCATCAAGAAATGGTTCAAATTCAGCTAGAAAAAGAAGCAAGTGAAAAGCACCTAGGTCCCATAAGATGGAAACAGAAATCTCTAGCAGCAGAAAATGAGAAGACATTAGATGGTCACATAATAGAGTTTATGGAGCCAGAAATCCTTAACCACGATAGGAGTGACCCAATCAGAAAAAGAAGAGAAGATTTTCTTAGAAGTACCAACTTCCCATTAGGAAAAGTACACACAAGTGCCCATTCAAGTAACTCTAACCATCCAATTGAAAGAGAAGCACCAATATCCATCAACAAGAGAGTTACCATCCACTCACTAAGCAAACACAGAACTACCTCAGAGGGACAGTATGGGAAGTTGATAACCTTGCCTGATTCATTGGAAGAGCTTCTCAGGATTGCTGAAGAGAAGTTTGGAGGCTTCAAGCCTACAAAAGTCATCAATGCAGAGAATGCAGAGATAGACGATATGAGTGTCATTCGAGACGGTGATCATCTCTTTTTTCTTAGCAGTGACAGTGAAATTTTGAGTTCATGA 2208 0.4017 MPFSSAQNFFQMGNFPYSSFLSSDILPSLGARINQETRLRSYIISPFSPRYRAWEMLLIVLVIYSAWICPFEFAFLPYKQDALFIIDNIVNGFFAIDIVLTFFVAYLDSHSYLLVDDPKKIAVRYISTWLIFDVCSTAPFQSISLLFTEHSSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYVIADRYPDAKTTWIGSVYPNFKQLSLWDRYVISMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSHTRNFRDTVRAASEFALRNHLPHDVQDQILSHLCLRFKTEGLKQQETINGMPKAIRASIAYHLFFPIVQNSYLFQGVSHDFLFQLATEMEAEYFPPKEDVILQNESPTDLYMIVSGAVDLIHSVDGHDQVMKKAIAGDTFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNAIQANPEEAPVIMKNLLMMMLKEHEELGFEYPATDPGLALHQMHHGNNIRGCFCHGCTKILDSHGETRLHDMIFENGKIDLNDADAKRGHQEMVQIQLEKEASEKHLGPIRWKQKSLAAENEKTLDGHIIEFMEPEILNHDRSDPIRKRREDFLRSTNFPLGKVHTSAHSSNSNHPIEREAPISINKRVTIHSLSKHRTTSEGQYGKLITLPDSLEELLRIAEEKFGGFKPTKVINAENAEIDDMSVIRDGDHLFFLSSDSEILSS* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2613 735 Gene3D - 52 292 - -
Lja3g2613 735 ProSiteProfiles KHA domain profile. 657 735 IPR021789 -
Lja3g2613 735 Pfam KHA, dimerisation domain of potassium ion channel 656 725 IPR021789 -
Lja3g2613 735 CDD CAP_ED 369 476 IPR000595 -
Lja3g2613 735 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 7 533 - -
Lja3g2613 735 PANTHER POTASSIUM CHANNEL AKT1 7 533 IPR045319 GO:0005249|GO:0006813
Lja3g2613 735 ProSiteProfiles cAMP/cGMP binding motif profile. 369 488 IPR000595 -
Lja3g2613 735 SMART cnmp_10 369 486 IPR000595 -
Lja3g2613 735 Gene3D Jelly Rolls 336 496 IPR014710 -
Lja3g2613 735 SUPERFAMILY Voltage-gated potassium channels 46 291 - -
Lja3g2613 735 Pfam Ion transport protein 52 298 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g2613 735 PANTHER POTASSIUM CHANNEL AKT1 539 735 IPR045319 GO:0005249|GO:0006813
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 64 71 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 265 276 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 283 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 239 256 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2613 735 Pfam Cyclic nucleotide-binding domain 389 473 IPR000595 -
Lja3g2613 735 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 539 735 - -
Lja3g2613 735 SUPERFAMILY cAMP-binding domain-like 296 486 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2613 Lja-Chr3 35788884 35798891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2613 1 728 Ion Channels AT5G46240 60.081 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2613 K21867 - gmx:100800340 1109.75