Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2598 ATGGAAGCTTTTTTGAAGAAGGAATTTGAAGTAGAGGCGAAAAATCCATCTACAGAGTCGCTGCGTCGTTGGAGATCGGCGGTCTCGGTGGTGAAGAATCCTCGGAGAAGGTTCCGCTTTGTTTCAAATCCCACAGCTGAAGAATTGAAGGAAAAGCTCCAGGAAGATATTCGGATTGCCCAAAATGTTCAAAAAGCAGCTTTGCAGTTTATTGATACTGTTTCTGGTCAACCTGAAATCGAAACCACTCCTAAGCTTACTGATTTTGGCATTGATCCCGAATCGATTGCACGCCTTGTTCGTAGCTATGATAGCAAAAGGTTGAAACTGATTGATGGTGTTGATGGGGTTGCGAAACAACTCCGTGTCTCACTGGTTGATGGTGTTAATGAAGACAGCATAAATACCCGGCAACACTTTTATGGGTTTAATCGATATGCAGAAAAGCATTCTAAAACTTTTATCATGTTTGTGTGGGAATCACTGCAGGATTTAACGCTCATTCTTCTCACGGTTTGTTCTCTAGTTTTGATAGGTGTAAGAGTTGCCACAGAAGGGTGGCCAGTGAGCATGTATGATGAGGTGGGAGTTATACTTGGTGTGTTCTTGGTGAATATCTTTACTGCTATCAATGACTACCACCAATCATTGAAGTTCAGGGAATGGGACAGGGAGAACAAAAACATTTTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAAATATCAATTTATGACCTGGTAGTAGGAGATATTGTTCATTTGTCAACTGGGGATCGAATTCCAGCTGATGGGATTTACATATTGGGAAACAGTTTAAACATTGATGAATCGAGTTTAACAGGTCAGATTGAAACAGTTCATGTAAGGGAAGATAAACCTTTTCTTCTTGCAGGAACAAAAGTGCTAGATGGGTCAGGGAAGATGCTAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTGGAAGTTCTGAATGAGGAAGGACAAGAGGAAACCCCGTTGCAGGTGAAATTGAACGGAGTTGCTACAATTGTTGGTAAGATTGGGTTGAGTTTTTCCCTTCTTACATTTGTGGTGTTGGCTATAAGGTTTCTAGTGGAAAAGGCACTTCATGGTGAGTTTTCTAATTGGTCTTCCAAAGATGCAATGAAACTGCTGAACTACTTCACTATAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCAGTGACGCTCAACCTTGCTTTTGCAACAAAAAAATTGATGAGTGATAATGTACTAGTGAGGCATCTTTCTGCATGCGAAGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACGTTGACCACTAACCACATGGTAGTCAATAAACTATGGATATCAGGAGAAGTTGTGGAGATGAAAGGTAATGAGAGTGGAGACATATTGAAAATGAAGATATCTGAAGGAGTTCTAAGCATACTTTTACAGGCTATATTTCAAAATAATGCTTCTGAAATAGTTAAGGATAAACATGGAAAGATCACAATATTAGGAACACCAACGGATTCAGCATTATTGGAACTTGGTTTGCTTTTGGGGGTTGATTTTGATGTCCAATGCAGATTATATAAGAAACTTAAGGTTGAGCCTTTCAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGTCTTCCTAATGGAGGAGTAAGAGCTTTCTGCAAAGGTGCCTCAGAAATAATATTAAAAATGTGCGACAAAATGATTGATTGCAATGGAATACCTATTGATTTCCTTGAAGACCATGCCAAGAATGTCTCTGATGTTATAAATGCCTTTGCTTCTGAAACTTTGAGAACTATTTGTTTGGCTGTTAAAGATATGAATGCAATCCCTGGCAAAGCTGACATCCCAGATAATGGCTATACACTGATAGCCGTTGTAGGAATCAATGATCCCATGCGCCCAGGGGTTAAAGATGTTGTTCAAACTTGTTCAGCAGCTGGAGTAACTGTTGCTATGGTCACTGGTGATGACATAAATATAGCAAAGGCCATTGCTACAGAATGTGGTATACTCACCAGTGGTGGTGTAGCCATAGAAGGACCGCAATTCCGTAACTTGTCTACATGGCAAATGGAAGTTATCATACCAACTATTCAGGTGCTGGCACGATTGCAACCACTTGACAAACATTCCTTTGTAGCTAAACTCAAGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGAGATGGAACCAGTGATGCTCCTGCACTGCATGAGGCAGACATCGGAGTTGCCATGGGATTATCAGGAACAGAGGTTGCCAAAGAAAGTGCTGATATCGTTATAATGGATGATAACATTACAACTATTGTCAATGTAATCAAATGGGGTCGTGCAGTATACATAAACATTCAAAAATTAGTGCAGTTTCAGTTAACAGTAATTATCGTTGCTCTTGTGATCAACTTTTGTTCTGCATCAGTCGCAGGATATGTCCCCCTAACAGCTGTGCAGTTGCTTTGGATCAACTTGATTATGGACATTCTCTGCGCAATGGCCCTGGTCACTGAGCCACTTAATGATGGACTCATGAAAAGGCCCCCAGTTGGAAGGGGAGTGGAATTTATCACCAGAGTAATGTGGAGGAATATCATTGGCCAAAGCATATATCAAGTGATTGTCCTAACTGTTCTCAACTTTGAGGGGAGGGATATACTGAGTATAACTGGTTCAGATGCAACTGATGTTCTCAGAACTTTGATATTCAACTCCTTTATATTTTTCCAGATTTTCAACGAGATTAACTGCCGAGAGATAGAAAAGATAAACATTTTCAAAGGCATTCTTGATAGCTGGGCATTTTTGGTGATTATTTTCTCAACTGTGTCAATTCAGGTAATCATAGTGCAGTTCCTTGGAACTTTTGCCTGCACAGTGCCTCTAAATTTGAAACTCTGGTTATTTAGTGTTTTAGTTGGTTCCACCAGCATGTTTATAGCTACTCTTTTGAAGTGCATCCCAGTTAAAAGAGATGTGAGTATTCACCATGATAGTTATGAGGCACTGCCTACACATCTCTAG 3078 0.4048 MEAFLKKEFEVEAKNPSTESLRRWRSAVSVVKNPRRRFRFVSNPTAEELKEKLQEDIRIAQNVQKAALQFIDTVSGQPEIETTPKLTDFGIDPESIARLVRSYDSKRLKLIDGVDGVAKQLRVSLVDGVNEDSINTRQHFYGFNRYAEKHSKTFIMFVWESLQDLTLILLTVCSLVLIGVRVATEGWPVSMYDEVGVILGVFLVNIFTAINDYHQSLKFREWDRENKNIFVQVTRDGKRQKISIYDLVVGDIVHLSTGDRIPADGIYILGNSLNIDESSLTGQIETVHVREDKPFLLAGTKVLDGSGKMLVTTVGMRTEWGKLVEVLNEEGQEETPLQVKLNGVATIVGKIGLSFSLLTFVVLAIRFLVEKALHGEFSNWSSKDAMKLLNYFTIVVTMIVIAVPEGLPLAVTLNLAFATKKLMSDNVLVRHLSACEAMGSASYICLDKTGTLTTNHMVVNKLWISGEVVEMKGNESGDILKMKISEGVLSILLQAIFQNNASEIVKDKHGKITILGTPTDSALLELGLLLGVDFDVQCRLYKKLKVEPFNPVQKKMTVLVSLPNGGVRAFCKGASEIILKMCDKMIDCNGIPIDFLEDHAKNVSDVINAFASETLRTICLAVKDMNAIPGKADIPDNGYTLIAVVGINDPMRPGVKDVVQTCSAAGVTVAMVTGDDINIAKAIATECGILTSGGVAIEGPQFRNLSTWQMEVIIPTIQVLARLQPLDKHSFVAKLKNMFGEVVAVTGDGTSDAPALHEADIGVAMGLSGTEVAKESADIVIMDDNITTIVNVIKWGRAVYINIQKLVQFQLTVIIVALVINFCSASVAGYVPLTAVQLLWINLIMDILCAMALVTEPLNDGLMKRPPVGRGVEFITRVMWRNIIGQSIYQVIVLTVLNFEGRDILSITGSDATDVLRTLIFNSFIFFQIFNEINCREIEKINIFKGILDSWAFLVIIFSTVSIQVIIVQFLGTFACTVPLNLKLWLFSVLVGSTSMFIATLLKCIPVKRDVSIHHDSYEALPTHL* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2598 1025 SUPERFAMILY HAD-like 443 850 IPR036412 -
Lja3g2598 1025 Gene3D - 128 328 - -
Lja3g2598 1025 SUPERFAMILY Calcium ATPase, transmembrane domain M 113 1008 IPR023298 -
Lja3g2598 1025 ProSitePatterns E1-E2 ATPases phosphorylation site. 447 453 IPR018303 -
Lja3g2598 1025 SFLD Haloacid Dehalogenase 426 798 - -
Lja3g2598 1025 PRINTS H+-transporting ATPase (proton pump) signature 603 621 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2598 1025 PRINTS H+-transporting ATPase (proton pump) signature 746 762 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2598 1025 PRINTS H+-transporting ATPase (proton pump) signature 778 803 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2598 1025 SUPERFAMILY Calcium ATPase, transduction domain A 229 325 IPR008250 -
Lja3g2598 1025 Pfam Cation transport ATPase (P-type) 500 584 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 746 765 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 643 654 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 445 459 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 276 290 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 665 675 - -
Lja3g2598 1025 PRINTS P-type cation-transporting ATPase superfamily signature 770 782 - -
Lja3g2598 1025 Pfam Cation transporting ATPase, C-terminus 831 1004 IPR006068 -
Lja3g2598 1025 PANTHER CATION TRANSPORTING ATPASE 53 1012 - -
Lja3g2598 1025 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 451 655 IPR023299 GO:0000166
Lja3g2598 1025 PANTHER CALCIUM-TRANSPORTING ATPASE 53 1012 - -
Lja3g2598 1025 Pfam Cation transporter/ATPase, N-terminus 113 176 IPR004014 -
Lja3g2598 1025 SFLD p-type atpase 426 798 IPR044492 -
Lja3g2598 1025 Gene3D - 455 650 IPR023299 GO:0000166
Lja3g2598 1025 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 104 1008 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja3g2598 1025 Coils Coil 46 66 - -
Lja3g2598 1025 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 43 IPR024750 GO:0005516
Lja3g2598 1025 Pfam E1-E2 ATPase 231 423 - -
Lja3g2598 1025 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2598 1025 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 200 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2598 1025 Gene3D - 16 73 - -
Lja3g2598 1025 Gene3D - 160 1005 - -
Lja3g2598 1025 Gene3D - 442 791 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2598 Lja-Chr3 35240110 35245860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2598 53 1023 Primary Pumps ATPases AT3G57330 61.973 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2598 K01537 - gmx:100783489 1363.98