Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2597 ATGTCAGTGGCTGTAAGTTTGTGCAAATCTGCAGCTAACAAAGTTGTGGAAAAACTAAGCTCTCTGCTCAAAGAGAGATACACCTTGTACCTCTCCTTCGAGGACGACCTCAAGAAGCTCCAAAGCGACTTGTCAGCTATCTCAGCAGTTCTTCATGATGCAGCAGAGAAACCAACAACAACGCAGAGCCACAGCGTTCAGGACTGGTTGGGGAAGCTCCATGACACCCTGCACGATGCAGAAGACGTGTTGGATGACATCAACGCTGAAGCTTTGAGGCAGAAAGTGGTGGCAGAATGGCGCTTCGTCACACTGGTTAGAAACTTGCTCTTCCTCTCTGGGATTGATGCTAGAATCAAGGATATTCGAGGGAGGATTGATGATATAGCGAAACAGAGGAATAGTTTTCGCTTGCAGGAACCGGATCGTGATGGCGATCGCGATCGTGATCGTGATGTGGTTTTTACGCGAAGGCGGAGGGAGCAGGCGCGATTCGCGGAGGTTGTTGGAAGAGAAGGGGATCAGAAAGAGGTTGTGGAGCGGTTATTTGGAGGAGGTGAGGGTGTTTTTGCTGTTCCTGTTGTGGGAATTGGGGGTTTGGGGAAGACTGCACTGGTTGATTTGATTTTTGATGATGATAGGGTTAAGATGGGTTTTGATTTTAGGGTTTGGGTGGATGTGTGTGATGATTTGAATCCAGAGAGGATTAGGCACAAGAGAATCACCAGAGCAGTGGACTGTCGCGATGAAAATGTCCCTGCCATGGACTTGTTGTCAAGCCTGGAGTATAAACTGAGGGGTAAGAAGTTCTTGCTTGTCATTGATGATGTTTGGAATTGTAATAGGGTAGACTGGCTTGTTCTGAAGAAATTGTTAGGAAATGGGGATAGAGGAAGCAGGATTCTGGTGACGACGCGCTACAAAATCACTGCATCCATCATGGGTGAGAATAGGGGATTGTATGAGTTAGGTGGATTAGCTGACGGTGATTGTTGGTGTTTGTTTGAGAAATGGGCATTTGGGGAGGGAGAAAGTGCCTGTCATCCAAATCTGGCAAGAATAGGTCAAGAGATAGTGATGAAATGTGGTGGGGTGCCCTTAGCCATACGCACTTTGGGTGGATTACTGTCTGGAAGCAAAGAGGAATCTTATTGGTTGTCTGTGAGAAATAGTGATACTTGGGGTATTGGCCATATAGCTGAAAGTGAAGATGGTATATTGTCAGTGCTCAAGTTAAGCTATGATCAATTGCCATTGGGGTTGAAAGAGTGTTTTGCATATTGCTGCTTACTTCCCAAAGGGAGAGAATTTGATAAGCAAGATTTGATCCACTTATGGATGGCTCAAAGTTTCATTCATTCTCCTGATCAAAGTGACCAACAACAATTAGAGGACATTGGGAGTTGGTATGTCAATGAGCTTGTGTCGAGATCTATTTTTGATGTCGTAAGAGAGAATCATAAAGGTGAAATAGTGGAGTGCAGGATGCATGATCTATTGCATGATCTTGCTAAATCAGTGGCAGAAAGCTTGATGGCTAGCTCCGGCACTACTGCAAATAACACCAGACACCTTTCATTGTGGGATACAGAAGTTCCAACTTCATATCTCAATTTACCAAAGTTGAGAACACTTGTTTTGCACACCAAATGCTCAGAATCCGAATTGCACGCACTTTTATCCGGCTCAACTTACTTGCGCGTGTTGGATTTGAGCAACTCAGGACTAAAACATGTGCCAAGTTGCATTGGTAACATGAAACATCTGAGGTATCTAAATCTAAGTGGCAACCCTGACCTTCAGTCTCTTCCTGATTCCATTTGTGGGCTGCATTTTCTACAGACTTTGAAGCTATCAGGGTGCAGAAGAATTAGCACATTCCCCAGAAATTTCAGTCACTTGGTTTCACTTAGACATTTGGTGATAACCACTCCATATGTTTGGGAGAAACAACTTGGGACTTTAACCTCCCTTCGGTGGTTAACAATTGAAAACTGTAGGAACCTCTTGTCTTTGACTGAAGTGACACAGCACCTCGTTGCCCTTCGGACACTGCGTATCCACAACTGTAGTAAATTAACTTCATTGCCAAGTAGTTTGAAAAACTGCATTGCCCTTGAGGATTTGGAGGTTGTGAACTGCCCCAAGATGGAATCTTTGGAGATTTGCATGCAGGGTCTGTCTAGTTTTCGCTCTTTAACCATCAAGGGTCTACACAAGCTGACAACTCTACCCATGAAGCTTGAATTTTATGCGAGCAGTCTTCAGTACCTGATCATCATAGATTGCCTTAGTCTCATGAAACTGCCTGATTGCGTGGGGAATCTCTCATCACTGATGCGTGTACACATTAGATATTGCCCCAACCTGCAAAATTTGCCACATGGGTTCTCTCACCTTAGTGCTTTACAAGTCTTGAAAATTGATGGGTGTCCCCTTTTAAGCACAAGATGTAGGAGGAATGTTGGCCAGGATTGGCAACAGATTGCTCATGTACGTGAAATCTATCTTGACAGTGTCAAGATCTAG 2529 0.4444 MSVAVSLCKSAANKVVEKLSSLLKERYTLYLSFEDDLKKLQSDLSAISAVLHDAAEKPTTTQSHSVQDWLGKLHDTLHDAEDVLDDINAEALRQKVVAEWRFVTLVRNLLFLSGIDARIKDIRGRIDDIAKQRNSFRLQEPDRDGDRDRDRDVVFTRRRREQARFAEVVGREGDQKEVVERLFGGGEGVFAVPVVGIGGLGKTALVDLIFDDDRVKMGFDFRVWVDVCDDLNPERIRHKRITRAVDCRDENVPAMDLLSSLEYKLRGKKFLLVIDDVWNCNRVDWLVLKKLLGNGDRGSRILVTTRYKITASIMGENRGLYELGGLADGDCWCLFEKWAFGEGESACHPNLARIGQEIVMKCGGVPLAIRTLGGLLSGSKEESYWLSVRNSDTWGIGHIAESEDGILSVLKLSYDQLPLGLKECFAYCCLLPKGREFDKQDLIHLWMAQSFIHSPDQSDQQQLEDIGSWYVNELVSRSIFDVVRENHKGEIVECRMHDLLHDLAKSVAESLMASSGTTANNTRHLSLWDTEVPTSYLNLPKLRTLVLHTKCSESELHALLSGSTYLRVLDLSNSGLKHVPSCIGNMKHLRYLNLSGNPDLQSLPDSICGLHFLQTLKLSGCRRISTFPRNFSHLVSLRHLVITTPYVWEKQLGTLTSLRWLTIENCRNLLSLTEVTQHLVALRTLRIHNCSKLTSLPSSLKNCIALEDLEVVNCPKMESLEICMQGLSSFRSLTIKGLHKLTTLPMKLEFYASSLQYLIIIDCLSLMKLPDCVGNLSSLMRVHIRYCPNLQNLPHGFSHLSALQVLKIDGCPLLSTRCRRNVGQDWQQIAHVREIYLDSVKI* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2597 842 Gene3D - 326 413 IPR042197 -
Lja3g2597 842 PRINTS Disease resistance protein signature 362 376 - -
Lja3g2597 842 PRINTS Disease resistance protein signature 191 206 - -
Lja3g2597 842 PRINTS Disease resistance protein signature 264 278 - -
Lja3g2597 842 PRINTS Disease resistance protein signature 584 600 - -
Lja3g2597 842 Gene3D - 414 504 IPR036388 -
Lja3g2597 842 Pfam NB-ARC domain 172 415 IPR002182 GO:0043531
Lja3g2597 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 428 IPR027417 -
Lja3g2597 842 PANTHER DISEASE RESISTANCE PROTEIN RP 28 797 IPR044974 GO:0006952
Lja3g2597 842 SUPERFAMILY L domain-like 495 817 - -
Lja3g2597 842 Gene3D Ribonuclease Inhibitor 505 842 IPR032675 -
Lja3g2597 842 CDD RX-CC_like 10 131 IPR038005 -
Lja3g2597 842 PANTHER OS08G0543100 PROTEIN 28 797 - -
Lja3g2597 842 Pfam Leucine rich repeat 565 622 IPR001611 GO:0005515
Lja3g2597 842 Pfam Rx N-terminal domain 13 98 IPR041118 -
Lja3g2597 842 Gene3D - 11 122 - -
Lja3g2597 842 Gene3D - 156 318 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2597 Lja-Chr3 35236842 35239606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2597 192 816 WRKY Transcription Factor Family AT5G45050 23.874 1.47e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2597 - - lang:109363325 1021.54