Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2588 ATGCAGTTTCAGAATGGATACATTGGGGAGTTTGAATATGTTGATGAACACAGAGCTGCGAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCTTCAAGACAATTTTCCTATACTGAGTTTGGTCAATGCATATTAACTTGGTCACAGAAGCGGATAGATGCATCTTTCCTTCCAGGCACACATATGGTCTTCTTTATCCTGAATGTTGTTGCAGGATATGGATTGCTATTGATGTGTACACCATTTCTGAGAGTAAAGAAGAAATCTCCCTCTTAG 312 0.4071 MQFQNGYIGEFEYVDEHRAAKIVVELNGRLNKEIEGWTARLLPSRQFSYTEFGQCILTWSQKRIDASFLPGTHMVFFILNVVAGYGLLLMCTPFLRVKKKSPS* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2588 103 SUPERFAMILY Ribosomal protein S8 4 39 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lja3g2588 103 PANTHER 40S RIBOSOMAL PROTEIN S15A 4 51 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja3g2588 103 Gene3D - 2 30 - -
Lja3g2588 103 PANTHER BNAA02G06730D PROTEIN 4 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2588 Lja-Chr3 35079088 35082430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2588 4 65 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 58.667 3.93e-22 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2588 K02957 - lja:Lj0g3v0336449.1 96.2857