Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2585 ATGAAGAGGTCTCCAGCAACTTCTTCCTCTTGTTCTTCTTCATCTTCCTCTGTTGGGTTTGGAGGTCCCATTCAATCAGAGAAAAGAAGGGCTAATAAGCATCCCAAAAGAAATCTCAATGTACAGAAATGCAAGCAGAATCCAACCACTGGTGGTAGCAGAAGAAGCTCCATTTACAGAGGAGTTACCAGGCATAGATGGACTGGGAGGTTTGAAGCTCACCTTTGGGATAAGAGTTCCTGGAACAACATACAGAACAAGAAGGGAAGACAAGTTTATTTGGGGGCATATGACACTGAAGAAGCAGCAGCGCGTACCTATGATCTTGCAGCACTTAAGTATTGGGGCAAAGATGCAACCTTGAATTTCCCGATAGAAACGTATTCAAAGGATGTTGAGGAAATGGATAAGGCGTCAAAAGAGGAATACCTGGCTTCTTTGCGGCGACAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTACCGAGGGGTAGCCAGGCATCACCATAATGGACGCTGGGAAGCTAGGATTGGAAGAGTATGTGGCAACAAGTACCTCTATTTGGGGACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGCACAGAGGACTGAATGCAGTGACCAATTTTGACATAAACAACTACATTGACAAAATAAAGAAGAAAAATGAAGAATGCCAACAAATAGAAGCACAAACTGCAGAAATAGCTCCCAACACCCCTGACTCTGAAGAACCAGAAGCAGAAGTAGTAGAACAGACAATTACAAACACGCCCCCACCTGAGAATCTTCACATGCAACCACAGCAGCACCAAGTTCAATACACTCATATTCCTCCAAGTGAGGAGTTCTCACTAGGCACTGTTATGGACCATGTTCTGGAGCAGGACCTGCCATGGAGCTTCATGCACTCTGGGTTGTTGCCACAGTATCATCATCAAGACCCAGACTTGTATCTGAGCAAAGCAGAGGATTTAATGGGCATGTTTGATGGTGCAGGGTTTGAGGATGACATTGATTTTCTGTTCAGCACAGAGCCTGGTGGTGAGAGTGACATCAACATCAGTGCAGGTTTAGATAGTATTGACTGTGGAGGAGATGGTGCAAATGGGGGTGCAGATGGAAGCATGGTGGATAACAAGCCGCAGAAGCACCTGTTGTCTCTTAATGCTTCACCTTCATCTACAACAACTACAGATTACAGTGTCTTGTAA 1236 0.4482 MKRSPATSSSCSSSSSSVGFGGPIQSEKRRANKHPKRNLNVQKCKQNPTTGGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYSKDVEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEHRGLNAVTNFDINNYIDKIKKKNEECQQIEAQTAEIAPNTPDSEEPEAEVVEQTITNTPPPENLHMQPQQHQVQYTHIPPSEEFSLGTVMDHVLEQDLPWSFMHSGLLPQYHHQDPDLYLSKAEDLMGMFDGAGFEDDIDFLFSTEPGGESDINISAGLDSIDCGGDGANGGADGSMVDNKPQKHLLSLNASPSSTTTTDYSVL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2585 411 SUPERFAMILY DNA-binding domain 159 220 IPR016177 GO:0003677
Lja3g2585 411 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g2585 411 CDD AP2 159 220 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 Pfam AP2 domain 58 116 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 Pfam AP2 domain 159 209 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 SUPERFAMILY DNA-binding domain 57 126 IPR016177 GO:0003677
Lja3g2585 411 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 SMART rav1_2 58 130 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 Coils Coil 219 239 - -
Lja3g2585 411 CDD AP2 57 125 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 310 - -
Lja3g2585 411 ProSiteProfiles AP2/ERF domain profile. 58 124 IPR001471 GO:0003700|GO:0006355
Lja3g2585 411 Gene3D AP2/ERF domain 58 126 IPR036955 GO:0003700|GO:0006355
Lja3g2585 411 Gene3D AP2/ERF domain 159 220 IPR036955 GO:0003700|GO:0006355
Lja3g2585 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 310 - -
Lja3g2585 411 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g2585 411 MobiDBLite consensus disorder prediction 41 57 - -
Lja3g2585 411 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2585 Lja-Chr3 35037482 35041874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2585 145 238 AP2-EREBP Transcription Factor Family AT1G51190 38.835 2.19e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja3g2585 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2585 - - gmx:100527432 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2585 3 35037482 35041874 Lja3g2585 3 35037482 35041874 ECH