Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2581 ATGGATATTGAACCAGTAGATGAAAGAGAGAACAATGATAGACCTGCTTCTGAAAATGTTGAATCTGAAAAAGGCCACTTACTAAATATGACTGCGATTGAAAGAGGAATAAATAATCAGGAAGGTGATGCATGTAGTAAACCACAAGTGGGCATGCTGTTCGAATCAGAAGATGCTGCAAAATCATTTTATGATGCATATGCAAGGCATGTAGGATTTAGCATCCATGTTGGTCAATTCAGTCGTGCTAAGCCTGATGGTCCAATTATAACTTGGAACTTTGCTTGTTCCAGGGAGGTGGTTAAAAGGAAGAATGTATCGAGTTGCAATGCGATGCTTAGAATAGAGAGAAAAGATGCAGAGTGGTTAGTGACAAAATTTGTTGAGGACCATAACCATTCCCTGGCTTCCTCTAGAAAGGTGCAGTACCTTCAACCCCATAGGCATTTTACAGGTGCTACAAAAAATGTTACAGAGACATTTGATGCCAGTAATGATTCCTATTTTTCTACGAACGGCAATCACTTAGAACAGATTAATATAGTTAGGAGTCCCTCTCCAGCTGAAAAAAGTCATCCAACGAGAAACACTACGCCTTTTACCTATGTAAAATCATCCCAAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTCAATTACTTTAAGAAGATGCAGGGAAAAAACCCTGGCTTCTATTATGCAATACAACTTGATGATGAAAACCGCATGATCAATGTATTCTGGGCAGATGCGAGGTCAAGAAGTGCATATAATTACTTTGGTGATGCAGTAATTTTTGACACAATGTATAGACCTAATCAATACCAAGTTCCATTTGCTCCATTTACAGGAGTCAATCATCATGGCCAGAATGTTTTATTCGGCTGTGCATTACTACTAGATGAATCTGAGTCTTCCTTTACTTGGCTGTTCAGGACATGGCTATCTGCTATGAATGATCGACCACCGGTTTCTATTACCACAGACCAAGATAGAGCCATACAAGCAGCTGTTGCGCAGGTGTTTCCAGAAACTCGCCATTGTATTTGTAAGTGGCACATTTTGAGAGAAGGTCAAGAAAGACTGGCTCATATTTACCTTGCTCATCCATCATTTTATGGGAAGCTGTATAGCTGCATAAATTTCTCTGAGACTGTTGAGGATTTTGAATCAACATGGAAGTCTCTTGTAGATAAATATGATCTTCTTAAAAATGATTGGCTTCAAGCAGTGTATAATGCTCGCAAACAATGGGCCCCTGTTTACTTTCATGATACTTTCTTTGCTGCATTTACTTCAAACCATGGGGTTCGCTCTTTTTTTGATGGCTATGTAAATCAACAGACAACCTTGCCTTTGTTTTTTAAGCAGTATGAAAGATCTCTAGAACATTCTTTGGAAAAAGAAATAGAAGCAGATTACGAGACCATTTGTACCACTCCTGTTTTGAAGACTCCATCACCAATGGAACAACAGGCTGCTAATCAATACACTAAAAAGATTTTTGCGAAGTTTCAGAAGGAACTGGTCGAAACATTCGCGTATACTGCTAATAATATTGAGGATGATGGTGTGGTCAGTAAATACAGGGTTGCAAAATATGAAGACGATCACAAGATATACGTGGTCACATTAGATATCTCTCAAATGAAGGTAAATTGCAGCTGTCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATATATTGACGGTCTTCACTGTTACAAATGTTCTTACCCTACCATCACACTACATTTTGAAGCGATGGACAAGGAATGCAAAGTCCAGTACCGGAACAAATGAAAAAGTACCGGATCCTCTTCACATTGAAAATCTCACTTCACGTTTTAATAGTTTATGTCAAGAAGCCATTAAGCTTGCAGAAGAAGGGGCAATAGCTGTAGAGACTTATAACACTGCAATGAATGCATTAAGAGAAGGTTCTAAAAAGGTTGATGTTGTGAAGAAAAATGTTGCGAAAGTCACACCTCCTAACACTCAAGGTAATGGAAGCAGTCAGGAAGACAATAGCATGGGGAGCCTTTCATCTATTTCTGAACTCATCCCATCATTGTGGCCTTGGCAAGATTCAGTGACACATCACTCTAATTGTAATAACATTCAGCTTCCTGTTACTGATCTGAGTCATCCTAGTTTGACTCCCATTTCTATTCACCGTGACGGTGGCCGTCCAGATAGCACTGTTGTCCTTACTTATTTCAAGTCTATGACTTGGGTTGTAGAAAATAAGAATTCAAGCCCGTCCAATAAAGTTGCAGCCATCACGATGAAGCTGCAAGATTACAGCAAGAACCCTTCAAGAGAAACAGAAGTGCAATTCAGGGGGACGAGGATGACTTTGGAGCCTATGTTGAGGTCAATGGCTTACATCAGTCAGCAGCTCGCTGCACCAGTCAATGGAGTTGCTGTCATCAATCTGAAGCTTCAGGACACAAAGACAAGTACTGGGGCAACAGAGGTGAATTTCCTAGTTTCTAGAGATACACTAGGTTCCATGCTGAGATCTATGACCTACATCCAGGAGCAGCTATAA 2559 0.4002 MDIEPVDERENNDRPASENVESEKGHLLNMTAIERGINNQEGDACSKPQVGMLFESEDAAKSFYDAYARHVGFSIHVGQFSRAKPDGPIITWNFACSREVVKRKNVSSCNAMLRIERKDAEWLVTKFVEDHNHSLASSRKVQYLQPHRHFTGATKNVTETFDASNDSYFSTNGNHLEQINIVRSPSPAEKSHPTRNTTPFTYVKSSQKRTLGRDAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRTWLSAMNDRPPVSITTDQDRAIQAAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSFYGKLYSCINFSETVEDFESTWKSLVDKYDLLKNDWLQAVYNARKQWAPVYFHDTFFAAFTSNHGVRSFFDGYVNQQTTLPLFFKQYERSLEHSLEKEIEADYETICTTPVLKTPSPMEQQAANQYTKKIFAKFQKELVETFAYTANNIEDDGVVSKYRVAKYEDDHKIYVVTLDISQMKVNCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSTGTNEKVPDPLHIENLTSRFNSLCQEAIKLAEEGAIAVETYNTAMNALREGSKKVDVVKKNVAKVTPPNTQGNGSSQEDNSMGSLSSISELIPSLWPWQDSVTHHSNCNNIQLPVTDLSHPSLTPISIHRDGGRPDSTVVLTYFKSMTWVVENKNSSPSNKVAAITMKLQDYSKNPSRETEVQFRGTRMTLEPMLRSMAYISQQLAAPVNGVAVINLKLQDTKTSTGATEVNFLVSRDTLGSMLRSMTYIQEQL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2581 852 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g2581 852 MobiDBLite consensus disorder prediction 662 682 - -
Lja3g2581 852 MobiDBLite consensus disorder prediction 7 21 - -
Lja3g2581 852 Pfam SWIM zinc finger 542 576 IPR007527 GO:0008270
Lja3g2581 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 795 IPR031052 GO:0006355
Lja3g2581 852 MobiDBLite consensus disorder prediction 661 682 - -
Lja3g2581 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 36 795 - -
Lja3g2581 852 Coils Coil 611 631 - -
Lja3g2581 852 SMART 26again6 553 580 IPR006564 GO:0008270
Lja3g2581 852 ProSiteProfiles Zinc finger SWIM-type profile. 542 578 IPR007527 GO:0008270
Lja3g2581 852 Pfam MULE transposase domain 265 357 IPR018289 -
Lja3g2581 852 Pfam FAR1 DNA-binding domain 62 136 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2581 Lja-Chr3 35017009 35020398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g2581 MULE 2.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2581 - - gmx:100789242 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2581 3 35017009 35020398 Lja3g2581 3 35017009 35020398 ECH