Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2568 ATGACTGTGAAAGTGAGGAGGGCATTGAAGCATTGGGTGAAGAGGTTAGGACAAAGTCTGTTCCTTCTTCTAGGAGCTCATCTAAAAGGACTAGAGCAGCAGAGGTTCATAATTTGTCTGAAAAGGAGCAGGATCAACGAGAAAATGAAGACTTTGCAAAATCTAATTCCAAACTCTAACAAGACTGATAAGGCTTCCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAGCCCCTTGAAAATGATCTGCATCCATGA 276 0.413 MTVKVRRALKHWVKRLGQSLFLLLGAHLKGLEQQRFIICLKRSRINEKMKTLQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQPLENDLHP* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2568 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 87 IPR036638 GO:0046983
Lja3g2568 91 Pfam Helix-loop-helix DNA-binding domain 42 79 IPR011598 GO:0046983
Lja3g2568 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 78 IPR011598 GO:0046983
Lja3g2568 91 SMART finulus 38 84 IPR011598 GO:0046983
Lja3g2568 91 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 85 IPR031066 -
Lja3g2568 91 PANTHER TRANSCRIPTION FACTOR SPATULA 41 85 - -
Lja3g2568 91 Gene3D - 40 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2568 Lja-Chr3 34301591 34303542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2568 25 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 64.789 6.22e-21 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g2568 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2568 - - var:108336909 84.3445