LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2567	ATGGGAAAGAAAAAGACGGACGATGCAGGCCAGTCTACGAAGGCCAAAGCTAGTAGCAAAGATGCTCCTAAGAAAGAAAAAATTTATGTCGCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAAGCCAAAAAAGTAGCTTCTTCCTCCAATAAGCCAAAGCCAAAACCGAAAGCTTCTACTTACACTAATGGTATTGATCTTCCTCCCTCTGATGATGATGATGACGATCTATCTGAAGATGAGTCCAAACAGTCCAGACCTGATTTCAAGCCACTTGAAGTGTCTGTTAATGACAAAGAGTTGACAAAACGTGAGAAGAAAGATATTTTGGCTTCCCATGCTGTTGAGCAGGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTTACTGTTAATGATGTTGATGCTAATGTTAAAGATATAACGGTGGAAAAATTTTCTGTGTCTGCTCGAGGTAAGGAACTTTTGAAAAATACATCGGTGAAGATATCTCATGGGAAGCGATATGGTTTGGTTGGGCCCAATGGAATGGGCAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATCGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGGGATGATAAAATAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAATGTTCGACAAGAAGTTGCTGCTCTCACAAATGCAGCTTCTGTTGAGGAAAGTGTAGATAAAGATAATAATTTGGAGGAAGATGAAGCAGGAGAAAAGTTAGCAGAGCTGTATGAAAAATTACAGCTGATGGGGTCTGATGCTGCTGAATCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGCGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTACAGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAAAACACTTTGGTGGTTGTCTCTCATGATAGGGATTTCCTGAATACAGTATGCATTGAGATTATTCATCTCCATGATTTGAAGCTTCATCTCTATCGTGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATTAATAAGAAGTATGAGATTTATGACAAGCAAATGAAAGCGGCTAAAAGGAGTGGAAACCGGGCTCAACAAGAAAAGGTGAAGGATCGAGCTAAGTTTGTCGCAGCTAAGGAAGCATCTAAAAACAAGGGTAAGGGCAAGGGCAAGTTCAACTTTCCTGAACCTACTGAGCTCACACCTCCACTTATGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAACGGAGCTGGAAAATCTACATTGCTAAATCTTCTGGCTGGTGATTTGGTTCCATCTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACTTTCTGACAATGGATGAAACTCCTGTGCAGTACCTTCTCCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAAGAGGTTGTTCGTGCAAAGCTTGGTAAGTTTGGGCTGCCTAGTGTAAGGCCCAATATTGATGCATTGGATGAATTCACTGGAGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCATGTGTTTGTGACGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGATGGCACTATCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTAA	1929	0.4199	MGKKKTDDAGQSTKAKASSKDAPKKEKIYVAAMLASMDEKPDKAKKVASSSNKPKPKPKASTYTNGIDLPPSDDDDDDLSEDESKQSRPDFKPLEVSVNDKELTKREKKDILASHAVEQAKKEALRDDHDAFTVNDVDANVKDITVEKFSVSARGKELLKNTSVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKIALEAVVSANVELVNVRQEVAALTNAASVEESVDKDNNLEEDEAGEKLAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLQLDEPTNHLDLRAVLWLEEYLCRWKNTLVVVSHDRDFLNTVCIEIIHLHDLKLHLYRGNFDDFESGYEQRRKEINKKYEIYDKQMKAAKRSGNRAQQEKVKDRAKFVAAKEASKNKGKGKGKFNFPEPTELTPPLMQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDFLTMDETPVQYLLRLHPDQEGLSKQEVVRAKLGKFGLPSVRPNIDALDEFTGGVVLVSHDSRLISCVCDDEERSQIWIVEDGTIRNFPGTFEDYKDDLLKEIKAEVDD*	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2567	642	ProSitePatterns	ABC transporters family signature.	302	316	IPR017871	GO:0005524
	Lja3g2567	642	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	577	642	-	-
	Lja3g2567	642	PANTHER	-	4	573	-	-
	Lja3g2567	642	SMART	AAA_5	168	374	IPR003593	-
	Lja3g2567	642	SMART	AAA_5	485	631	IPR003593	-
	Lja3g2567	642	Coils	Coil	394	414	-	-
	Lja3g2567	642	MobiDBLite	consensus disorder prediction	1	102	-	-
	Lja3g2567	642	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	143	396	IPR027417	-
	Lja3g2567	642	Pfam	ABC transporter	159	330	IPR003439	GO:0005524
	Lja3g2567	642	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	141	405	IPR003439	GO:0005524
	Lja3g2567	642	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	339	618	IPR027417	-
	Lja3g2567	642	MobiDBLite	consensus disorder prediction	82	102	-	-
	Lja3g2567	642	Gene3D	-	444	548	IPR027417	-
	Lja3g2567	642	CDD	ABCF_EF-3	460	617	-	-
	Lja3g2567	642	PANTHER	-	577	642	-	-
	Lja3g2567	642	Gene3D	-	107	412	IPR027417	-
	Lja3g2567	642	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	4	573	-	-
	Lja3g2567	642	Pfam	ABC transporter	476	527	IPR003439	GO:0005524
	Lja3g2567	642	CDD	ABCF_EF-3	144	375	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2567	Lja-Chr3	34260757	34266351	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g2567	157	477	Calmodulin-binding Proteins	AT2G36910	23.620	2.50e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2567	K06184		-	gmx:100806865	1007.28